EST details — SGN-E246611
| Search information |
| Request: 246611 | Match: SGN-E246611 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C27770 | Clone name: cLEF-45-H24 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176742 is on microarray TOM1: SGN-S1-1-5.4.9.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176742 [TUS-24-L20] | Trace: SGN-T197522 | EST: SGN-E396196 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176742 [TUS-24-L20] | Trace: SGN-T197523 | EST: SGN-E396197 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246611 | Length: 381 bp (867 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246611 [] (trimmed)
CTTAAGCACAAGCGTGCTCATGTCTCAATATGTCAGATGCCTATCATGATTGCACCAACAGCTATGCAAAAAATGGCTCATCCTGATGGTGAGTA
TGCTATATCAAGAGCAGCATCGGCAGCAGAAACAATTATGACACTGTCGTCTTGGGGAACTTCAAGTGTCGAGGAGGTTAATTTAACAAGAACTG
ACGGCCGATTTTTCCACCTCTATGGGTATAAGGACAGAAATGTAACAATTCAATATTTACTGCCTACTTATGTTATGTGTTTTAAGGCTATAGCT
CTTACAGTTGATACCCCAAGATTGGGACGTAGAGAAACCGATCTTTAGAACAGAGTTAATTTGGCACCACATTTGGCACTGATGAACTTTGAAGG
A
TGCTATATCAAGAGCAGCATCGGCAGCAGAAACAATTATGACACTGTCGTCTTGGGGAACTTCAAGTGTCGAGGAGGTTAATTTAACAAGAACTG
ACGGCCGATTTTTCCACCTCTATGGGTATAAGGACAGAAATGTAACAATTCAATATTTACTGCCTACTTATGTTATGTGTTTTAAGGCTATAGCT
CTTACAGTTGATACCCCAAGATTGGGACGTAGAGAAACCGATCTTTAGAACAGAGTTAATTTGGCACCACATTTGGCACTGATGAACTTTGAAGG
A
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246611] | SGN-U593543 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T61346 [Download][View] | Facility Assigned ID: TMGGX48TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0256 | Quality Trim Threshold: 14.5 |
Working
