EST details — SGN-C84398
| Search information |
| Request: 84398 | Match: SGN-C84398 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C84398 | Clone name: cLET-28-K21 |
| ||
| Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C183577 is on microarray TOM1: SGN-S1-1-2.1.1.4
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183577 [TUS-42-I15] | Trace: SGN-T195958 | EST: SGN-E394632 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183577 [TUS-42-I15] | Trace: SGN-T195958 | EST: SGN-E399169 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183577 [TUS-42-I15] | Trace: SGN-T199406 | EST: SGN-E398080 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E297696 | Length: 596 bp (899 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E297696 [] (trimmed)
CTTGCACAAAAATCGAAAGCACGATGGATCACGCGGCGGATGCTCACCGGACGGATTTGATGACGATAACAAGGTTTGTGTTGAATGAACAGACG
AAGCACCCTGAATCCCGTGGAGACTTCAGTATTTTGCTCAGTCACATTGTTCTTGGCTGCAAGTTCGTATGCACTGCTGTTAACAAGAATTATGC
GTCAGATTTATTTGCCTTATAGCAGCCAATTTAGTGGAGGAATATCAATTTTTCCTCGTCTCTTCTATCTGCTGTATTATTTTCAGCGATGCAGA
TTAATGAAGTTGTAGTGCAAGATAATAAGTTAGCTGCAGGCAGGTTTGGCTAAACTCCTAGGACTTGCTGGTGAGACTAATGTGCAGGGAGAAGA
TCAAAAGAAACTTGATGTACTCTCAAATGAAGTGTTTATCAAGGCTTTGGTTAGCAGTGGCCGAACATGCATTCTTGTCTCTGAAGAAGATGAAG
AGGCCACATTTGTGGAGCCAGCTAACCGTGGAAAATACTGTGTAGTTTTTGATCCTCTGGATGGATCATCGAACATCGATTGTGGTGTTTCTATT
GGAACGATCTTTGGGATTTACATGAT
AAGCACCCTGAATCCCGTGGAGACTTCAGTATTTTGCTCAGTCACATTGTTCTTGGCTGCAAGTTCGTATGCACTGCTGTTAACAAGAATTATGC
GTCAGATTTATTTGCCTTATAGCAGCCAATTTAGTGGAGGAATATCAATTTTTCCTCGTCTCTTCTATCTGCTGTATTATTTTCAGCGATGCAGA
TTAATGAAGTTGTAGTGCAAGATAATAAGTTAGCTGCAGGCAGGTTTGGCTAAACTCCTAGGACTTGCTGGTGAGACTAATGTGCAGGGAGAAGA
TCAAAAGAAACTTGATGTACTCTCAAATGAAGTGTTTATCAAGGCTTTGGTTAGCAGTGGCCGAACATGCATTCTTGTCTCTGAAGAAGATGAAG
AGGCCACATTTGTGGAGCCAGCTAACCGTGGAAAATACTGTGTAGTTTTTGATCCTCTGGATGGATCATCGAACATCGATTGTGGTGTTTCTATT
GGAACGATCTTTGGGATTTACATGAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E297696] | SGN-U577391 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T109490 [Download][View] | Facility Assigned ID: TMEEE71TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.973 | Expected Error Rate: 0.0089 | Quality Trim Threshold: 14.5 |
Working
