EST details — SGN-C82163
Search information |
Request: 82163 | Match: SGN-C82163 |
Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
Clone information |
SGN ID: SGN-C82163 | Clone name: cLET-1-B4 |
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Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C179391 is on microarray TOM1: SGN-S1-1-4.3.2.9
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C179391 [TUS-31-K5] | Trace: SGN-T185139 | EST: SGN-E372682 | Direction: 3' | Facility: INRA |
Clone: SGN-C179391 [TUS-31-K5] | Trace: SGN-T185140 | EST: SGN-E372683 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E292219 | Length: 456 bp (887 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E292219 [] (trimmed)
AGGCCGTCGGTAAGAACAAGCGAATTTCCAAAGGCAAAAAAGGAGGGAAGAAGAAGGCAGCTGATCCATATGCTAAAAAGGATTGGTATGATATC
AAAGCTCCATCAGTATTTGGTGTCCGCAATGTAAGGAAGACCCTTGTTACCCGTACACAGGGTACAAAGATTGCTTCAGAAGGCCTGAAGCATCG
TGTGTTCGAAGTGTCATTGGCTGATCTTCAGAATGACGAAGATCACTCCTTCAGGAAGATTCGTCTGAGAGCTGAAGACGTCCAAGGAAGAAATG
TCTTGACAAACTTTCACGGTATGGATTTCACCACAGATAAATTGAGGTCACTGGTAAAGAAATGGCAATCATTGATTGAGGCTCATGTTGACGTT
AAGACAACTGATAGCTACACCTTGAGAATGTTCTGCATTGGCTTTACCAAAAAGCGTCCAAACCAACAAAAAAGAA
AAAGCTCCATCAGTATTTGGTGTCCGCAATGTAAGGAAGACCCTTGTTACCCGTACACAGGGTACAAAGATTGCTTCAGAAGGCCTGAAGCATCG
TGTGTTCGAAGTGTCATTGGCTGATCTTCAGAATGACGAAGATCACTCCTTCAGGAAGATTCGTCTGAGAGCTGAAGACGTCCAAGGAAGAAATG
TCTTGACAAACTTTCACGGTATGGATTTCACCACAGATAAATTGAGGTCACTGGTAAAGAAATGGCAATCATTGATTGAGGCTCATGTTGACGTT
AAGACAACTGATAGCTACACCTTGAGAATGTTCTGCATTGGCTTTACCAAAAAGCGTCCAAACCAACAAAAAAGAA
Unigenes |
Current Unigene builds | |||||
[SGN-E292219] | SGN-U580590 | Tomato 200607 | Build 2 | 97 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T102493 [Download][View] | Facility Assigned ID: TMEAD02TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.969 | Expected Error Rate: 0.0315 | Quality Trim Threshold: 14.5 |