EST details — SGN-C80386
| Search information |
| Request: 80386 | Match: SGN-C80386 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C80386 | Clone name: cLET-12-B17 |
| ||
| Library Name: cLET | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4-6 weeks
Microarray: Alias clone SGN-C183242 is on microarray TOM1: SGN-S1-1-1.3.3.10
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183242 [TUS-41-K16] | Trace: SGN-T196514 | EST: SGN-E395188 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183242 [TUS-41-K16] | Trace: SGN-T199479 | EST: SGN-E398153 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E292996 | Length: 481 bp (910 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E292996 [] (trimmed)
CCGCACTGCCAATGGACGAGAAGCGTGCCACTGCATTCGGTCTCATGAAGATTGATGAAGAAGGACGCATTATTGAATTTGCAGAGAAACCGCAA
GGAGAGCAATTGCAAGCAATGAAAGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTAT
ATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTT
CATTTGGGATGAGAGTGCGAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACA
AAAAAGCCGGTGCCAGATTTTAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGA
TGTCAC
GGAGAGCAATTGCAAGCAATGAAAGTGGATACTACCATTTTAGGTCTTGATGACAAGAGAGCTAAAGAAATGCCTTTTATCGCCAGTATGGGTAT
ATATGTCATTAGCAAAGACGTGATGTTAAACCTACTTCGTGACAAGTTTCCTGGGGCCAATGATTTTGGTAGTGAAGTTATTCCTGGTGCAACTT
CATTTGGGATGAGAGTGCGAGCTTATTTATATGATGGGTACTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCCAATTTGGGCATTACA
AAAAAGCCGGTGCCAGATTTTAGCTTTTACGACCGATCAGCCCCAATCTACACCCAACCTCGATATTTGCCACCTTCAAAAATGCTTGATGCCGA
TGTCAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E292996] | SGN-U577904 | Tomato 200607 | Build 2 | 86 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T105459 [Download][View] | Facility Assigned ID: TMEBU09TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0178 | Quality Trim Threshold: 14.5 |
Working
