EST details — SGN-C72080
| Search information |
| Request: 72080 | Match: SGN-C72080 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C72080 | Clone name: cLER-1-B4 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178451 is on microarray TOM1: SGN-S1-1-8.4.4.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178451 [TUS-29-D1] | Trace: SGN-T1492 | EST: SGN-E378392 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C178451 [TUS-29-D1] | Trace: SGN-T184108 | EST: SGN-E371039 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178451 [TUS-29-D1] | Trace: SGN-T184109 | EST: SGN-E371040 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280417 | Length: 501 bp (805 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280417 [] (trimmed)
CTCAACACAGCTTGGGAGTCCAAGCGTCAGGAAGTTTGGAAGGGGAGCGTGAAATACTGCTAAAGATGGAGGTGTCCGCCGTGGAACAGATGTCT
TTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTG
CTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATG
GGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTA
AGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGCTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGA
TAAATGGGCAGTGATGCCTCCACTGT
TTAAAGCTTTGGCACTTGGAGCTTCAGGCATTTTTATTGGAAGGCCAGTAGTTTTCTCATTGGCTGCTGAAGGAGAAGCTGGAGTGAAAAAAGTG
CTGCAAATGTTGCGCGATGAGTTTGAGCTAACTATGGCATTGAGTGGCTGTCGCTCACTGAAGGAGATTACTAGAAACCACATTGTCACTGAATG
GGACACCCCACATGCTGCTCTTCCAGCCCCAAGGTTGTGAGCATGTACTTGAAGTTTCATATTATTTCATCAAAGCAATATTGCTTCACTGTCTA
AGAAGCTTATAATTTGATTTGAATACTCGTTTCTGTTTAATGAGTTTACGGCTATGTTAAGCTTTTCATGGTATTGGAAAACTGATATATTCTGA
TAAATGGGCAGTGATGCCTCCACTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280417] | SGN-U578941 | Tomato 200607 | Build 2 | 184 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91971 [Download][View] | Facility Assigned ID: TPRAD02TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0113 | Quality Trim Threshold: 12.5 |
Working
