EST details — SGN-C68369
| Search information |
| Request: 68369 | Match: SGN-C68369 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C68369 | Clone name: cLEN-4-M15 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C181024 is on microarray TOM1: SGN-S1-1-3.3.17.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C181024 [TUS-35-O6] | Trace: SGN-T193658 | EST: SGN-E392332 | Direction: 3' | Facility: INRA |
| Clone: SGN-C181024 [TUS-35-O6] | Trace: SGN-T199196 | EST: SGN-E397870 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E272114 | Length: 640 bp (923 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E272114 [] (trimmed)
AAAAGATGGCAGTCTACAGCAAAAAAGATGATTTTCAGGCCACAATTCATAATAGTTATGACAAAATGAGTGACCTAATAGCCTTTGATGATACT
AAGGCTGGTGTCAAAGGGCTTGTTGATTCCGGAATCAATAAAGTACCTCAAGTATTCATTCTACCGCCAAAATACAGGGTAAAAACATGTGAAAC
ACACATCAGTTTTCCAGTGATAGACCTCAAAGGCATTGATGAGGATCCGATAAAGTATAAGGAGATTGTGGACAAAGTTCGAGATGCATCGGAGA
CATGGGGTTTCTTTCAAGTGGTTAATCATGGAATTCCAACATCCATCTTGGAAAAAACGTTACTAGGAACACGACAGTTTTTCGAGCAAGATACC
GAGATCAAGAAACAATATTACACTCGAGATATTGGGGAAAAGGTGATTTATACTAGCAATCTTGATTTGTATAGCCCTTCTGTTCCAGCTGCAAG
TTGGAGAGACTCAATTTTCTTTTTCATGGCTCCGAATCCTCCTAGTCCACAAGAATTTCCAACAGCTTGCGGGGAAATTCTAATGGACTACTCCA
AGTATGTGACGGAATTGGGGTTCTCCTTGCTTGAATTATTGTCTGAAGGTCTCGGTCTCGATCGTAGTTA
AAGGCTGGTGTCAAAGGGCTTGTTGATTCCGGAATCAATAAAGTACCTCAAGTATTCATTCTACCGCCAAAATACAGGGTAAAAACATGTGAAAC
ACACATCAGTTTTCCAGTGATAGACCTCAAAGGCATTGATGAGGATCCGATAAAGTATAAGGAGATTGTGGACAAAGTTCGAGATGCATCGGAGA
CATGGGGTTTCTTTCAAGTGGTTAATCATGGAATTCCAACATCCATCTTGGAAAAAACGTTACTAGGAACACGACAGTTTTTCGAGCAAGATACC
GAGATCAAGAAACAATATTACACTCGAGATATTGGGGAAAAGGTGATTTATACTAGCAATCTTGATTTGTATAGCCCTTCTGTTCCAGCTGCAAG
TTGGAGAGACTCAATTTTCTTTTTCATGGCTCCGAATCCTCCTAGTCCACAAGAATTTCCAACAGCTTGCGGGGAAATTCTAATGGACTACTCCA
AGTATGTGACGGAATTGGGGTTCTCCTTGCTTGAATTATTGTCTGAAGGTCTCGGTCTCGATCGTAGTTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E272114] | SGN-U579001 | Tomato 200607 | Build 2 | 109 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T88131 [Download][View] | Facility Assigned ID: TRRAM80TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0047 | Quality Trim Threshold: 14.5 |
Working
