EST details — SGN-C65540
| Search information |
| Request: 65540 | Match: SGN-C65540 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C65540 | Clone name: cLEN-10-H4 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C184221 is on microarray TOM1: SGN-S1-1-6.4.16.5
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C184221 [TUS-44-D11] | Trace: SGN-T198255 | EST: SGN-E396929 | Direction: 3' | Facility: INRA |
| Clone: SGN-C184221 [TUS-44-D11] | Trace: SGN-T198256 | EST: SGN-E396930 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E275444 | Length: 520 bp (830 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E275444 [] (trimmed)
GCCTACTTAAGTACCCAACTCCTCAGGTTATTCAAGGCGATAAAACTGCATGGAGGACGGATGAAGAATTTGGGAGAGAAATGTTGGCAGGATCC
AATCCTGTCTTAATCAGTAGACTCCAAGAATTTCCTCCGAAGAGCAAGTTGGATCCAACCATATATGGAAACCAAAACAGTTCAATTACCACAGA
ACATGTACAGGATAAGTTGAATGGATTAACAGTGAATGAGGCAATCAAGAGTAACAGGTTATTCATATTGAACCACCATGACATCGTGATGCCAC
TATTGAGGAAAATTAACATGTCAGCAAACACAAAAGCCTATGCCTCAAGAACTCTGCTCTTCCTACAAGATGATAGAACTTTGAAGCCACTAGCA
ATTGAACTAAGCTTGCCACATCCAGACGGAGATCAATTTGGTACTGTTAGTAAAGTATATACACCAGCTGACCAAGGTGTTGAAAGTTCTATCTG
GCAGATTGCCAAAGCCTATGTAGCAGTGAATGACATGGGCATTCA
AATCCTGTCTTAATCAGTAGACTCCAAGAATTTCCTCCGAAGAGCAAGTTGGATCCAACCATATATGGAAACCAAAACAGTTCAATTACCACAGA
ACATGTACAGGATAAGTTGAATGGATTAACAGTGAATGAGGCAATCAAGAGTAACAGGTTATTCATATTGAACCACCATGACATCGTGATGCCAC
TATTGAGGAAAATTAACATGTCAGCAAACACAAAAGCCTATGCCTCAAGAACTCTGCTCTTCCTACAAGATGATAGAACTTTGAAGCCACTAGCA
ATTGAACTAAGCTTGCCACATCCAGACGGAGATCAATTTGGTACTGTTAGTAAAGTATATACACCAGCTGACCAAGGTGTTGAAAGTTCTATCTG
GCAGATTGCCAAAGCCTATGTAGCAGTGAATGACATGGGCATTCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E275444] | SGN-U578028 | Tomato 200607 | Build 2 | 233 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T89316 [Download][View] | Facility Assigned ID: TRRBN38TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0099 | Quality Trim Threshold: 14.5 |
Working
