EST details — SGN-C65476
| Search information |
| Request: 65476 | Match: SGN-C65476 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C65476 | Clone name: cLEN-10-E20 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C180807 is on microarray TOM1: SGN-S1-1-4.2.17.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180807 [TUS-35-F5] | Trace: SGN-T196383 | EST: SGN-E395057 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180807 [TUS-35-F5] | Trace: SGN-T199713 | EST: SGN-E398387 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E275516 | Length: 627 bp (864 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E275516 [] (trimmed)
GGACAAAGTTCGAGATGCATCGGAGAAATGGGGTTTTTTCCAAGTGGTTAATCATGGGATTCCAACATCCGTCTTGGACAGAACGTTGCAAGGAA
CACGACAGTTCTTTGAGCAAGATAACGAGGTTAAGAAACAGTATTACACTCGAGATACTGCGAAAAAAGTGGTTTATACTAGCAATCTTGATTTG
TATAAATCTTCTGTTCCAGCTGCAAGTTGGAGAGACACGATTTTCTGTTACATGGCTCCGAATCCTCCCAGTCTACAAGAATTTCCAACTCCATG
CGGTTTAAATTTCTAGATCCGCCACTGCTCAGTTGATTGACTATCTAAAGACAGCAAAAATTCCTAGATCTGTCGCTGCTCAGTTGATTGAGTAT
CTAAATACAGCAAATTCTTAGATCCGCCATTGCTTAGTTGATTGACTATCTAAAGACGTCTGATTTTATATAAAAATATGTCATGTTTCAATGCA
GGGAGTCATTAATAGACTTCTCCAAGGATGTGAAGAAACTGGGATTCACTTTACTTGAATTATTGTCTGAAGGTCTCGGTCTCGATCGTAGTTAT
CTCAAAGATTATATGGATTGTTTTCATCTTTTTTGTTCTTGCAACTACTACCCACCA
CACGACAGTTCTTTGAGCAAGATAACGAGGTTAAGAAACAGTATTACACTCGAGATACTGCGAAAAAAGTGGTTTATACTAGCAATCTTGATTTG
TATAAATCTTCTGTTCCAGCTGCAAGTTGGAGAGACACGATTTTCTGTTACATGGCTCCGAATCCTCCCAGTCTACAAGAATTTCCAACTCCATG
CGGTTTAAATTTCTAGATCCGCCACTGCTCAGTTGATTGACTATCTAAAGACAGCAAAAATTCCTAGATCTGTCGCTGCTCAGTTGATTGAGTAT
CTAAATACAGCAAATTCTTAGATCCGCCATTGCTTAGTTGATTGACTATCTAAAGACGTCTGATTTTATATAAAAATATGTCATGTTTCAATGCA
GGGAGTCATTAATAGACTTCTCCAAGGATGTGAAGAAACTGGGATTCACTTTACTTGAATTATTGTCTGAAGGTCTCGGTCTCGATCGTAGTTAT
CTCAAAGATTATATGGATTGTTTTCATCTTTTTTGTTCTTGCAACTACTACCCACCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E275516] | SGN-U580508 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T89388 [Download][View] | Facility Assigned ID: TRRBL34TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.975 | Expected Error Rate: 0.0085 | Quality Trim Threshold: 14.5 |
Working
