EST details — SGN-E548870
| Search information |
| Request: 548870 | Match: SGN-E548870 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C192272 | Clone name: TUS-65-C22 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C94957 [cLEX-6-I7] | Trace: SGN-T116052 | EST: SGN-E304034 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C94957 [cLEX-6-I7] | Trace: SGN-T116192 | EST: SGN-E304174 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C192272 [TUS-65-C22] | Trace: SGN-T344264 | EST: SGN-E543389 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548870 | Length: 845 bp (908 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E548870 [] (trimmed)
CCTAAATGGTTGGATTAATGCACAGTCCATATTTGCCATTGAATTAGGAGCATAATTTAAGGGTGGAGTTAGTACAAACATTCAATTCTTCAAAG
CAACCTCACCTTAGCACAACAGTTCATGATACAAGAATGAGGGTGAACCAATTTCTTGGAAACATGGTAACAATATTAGGGGTCAAGAATTTACT
ACCCTTAGCTAAGTGCCAAGTGACCATATCAAAAATTTTCTCTTTCCGTTTCGATACACCAAATAATGGCACTCTACTTTAGTATCCTCCGGAAA
CCAGCTATCCTCTGATCTCCTTGTCCAAAAAATACAAGGCGCCTCTCCTTGTCAACAAAAACGTAATTGCCTTAAGAAGCAAATGCCATAAATCC
AAGAGAACATGTCAACTTATATACAATGGCTTAGTTTGCCATGATAGCCACTGAAAAGCACTCTCCATTTGATGCATCAACTATCAATTTCATTC
CTGCATACATCCTCAATGGCAGCAACTAGGACAATCAACAAAACATATATGATGAAAGCCGGCATACCAAAATCAGCAGTCTTGGCTTTGGTAAT
GGTAGATATGATTCAACTTTATGAAGCATCTTAAAGGTCATCCAGGTTAATCATTTCATCATTGTTCCAACACATCCCTGACAACTCTTTCGACT
GTGCTTCTGAGAAGCTCTCAATTTCTCCCAAAGCCTTTTCCATGGAACTTGCTAAATCTGCTTCCCACAGACCCAACTCACAGACTTTCTGGTAG
GTATCGTAACCTGCAGCTGTCAGGCCATCTGCCAGCATCTCCTTCAGGGTATTAGTGCAAATTCCCTCAGAGTCCATTAGCTGAA
CAACCTCACCTTAGCACAACAGTTCATGATACAAGAATGAGGGTGAACCAATTTCTTGGAAACATGGTAACAATATTAGGGGTCAAGAATTTACT
ACCCTTAGCTAAGTGCCAAGTGACCATATCAAAAATTTTCTCTTTCCGTTTCGATACACCAAATAATGGCACTCTACTTTAGTATCCTCCGGAAA
CCAGCTATCCTCTGATCTCCTTGTCCAAAAAATACAAGGCGCCTCTCCTTGTCAACAAAAACGTAATTGCCTTAAGAAGCAAATGCCATAAATCC
AAGAGAACATGTCAACTTATATACAATGGCTTAGTTTGCCATGATAGCCACTGAAAAGCACTCTCCATTTGATGCATCAACTATCAATTTCATTC
CTGCATACATCCTCAATGGCAGCAACTAGGACAATCAACAAAACATATATGATGAAAGCCGGCATACCAAAATCAGCAGTCTTGGCTTTGGTAAT
GGTAGATATGATTCAACTTTATGAAGCATCTTAAAGGTCATCCAGGTTAATCATTTCATCATTGTTCCAACACATCCCTGACAACTCTTTCGACT
GTGCTTCTGAGAAGCTCTCAATTTCTCCCAAAGCCTTTTCCATGGAACTTGCTAAATCTGCTTCCCACAGACCCAACTCACAGACTTTCTGGTAG
GTATCGTAACCTGCAGCTGTCAGGCCATCTGCCAGCATCTCCTTCAGGGTATTAGTGCAAATTCCCTCAGAGTCCATTAGCTGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548870] | SGN-U570318 | Tomato 200607 | Build 2 | 10 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349745 [Download][View] | Facility Assigned ID: TUS65C22_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0046 | Quality Trim Threshold: 14.5 |
Working
