EST details — SGN-E548628
| Search information |
| Request: 548628 | Match: SGN-E548628 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C191417 | Clone name: TUS-62-P7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C91717 [cLEW-8-E17] | Trace: SGN-T112375 | EST: SGN-E300770 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C191417 [TUS-62-P7] | Trace: SGN-T342789 | EST: SGN-E541914 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E548628 | Length: 784 bp (848 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E548628 [] (trimmed)
GCAGCTCTCTCAAGTATTGTCACTCAAAATCAGAAACTCCTTTTCTTCTTCAACAAGAACTTGAAAAAAGCAATGGCTCTGTCTCTCTTTTTCTT
TCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTC
AACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCT
CTTGTTTTATGGCTAAATGGAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCT
TGTTAAGAATGAACACAGTTGGAATAAAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTT
CCTATGAGACTGTTAATGATGAGATAACAGCCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAAT
TTATTTTTAACTGGAGAGAGTTATGCAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTT
GAAAGGAGTTGCATTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACT
CCACCTACAGAATGTTCACTTCTG
TCTTCTTTGTGCTTCTGTAAGAATTGGGTATGCATTTCCTCCTCATCATCCAGACAAAATCATTCTATTACCTGGACAACCCCAAGTGGGATTTC
AACAGTTTTCAGGCTATGTCACTGTTGATGACAAGAAACAAAGAGCTCTCTTTTACTACTTTGTGGAAGCAGAAACAGATCCAGCTTCTAAGCCT
CTTGTTTTATGGCTAAATGGAGGACCTGGTTGTTCTTCTGTGGGAGTTGGTGCATTTTCTGAGAATGGTCCATTCAGACCTAGAGGACAAGTTCT
TGTTAAGAATGAACACAGTTGGAATAAAGAGGCAAATATGTTGTACTTAGAGTCTCCAGTTGGGGTTGGCTTCTCTTATTCAACTAATACATCTT
CCTATGAGACTGTTAATGATGAGATAACAGCCAGGGACAATGTTGTTTTCTTGCAACGCTGGTTTAACAAATTCCCACAGTATAGAGAAAACAAT
TTATTTTTAACTGGAGAGAGTTATGCAGGCCATTATGTACCTCAACTTGCCAAGCTCATGATTGAGCTGAACAACAAGAAGAAATTGTTCAATTT
GAAAGGAGTTGCATTGGGTAATCCTGTCTTGGAATTTGCTACTGACTTCAATTCGAGGGCTGAGTACTTCTGGTCTCATGGCCTAATATCAGACT
CCACCTACAGAATGTTCACTTCTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E548628] | SGN-U585527 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T349503 [Download][View] | Facility Assigned ID: TUS62P07_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0009 | Quality Trim Threshold: 14.5 |
Working
