EST details — SGN-E546680
| Search information |
| Request: 546680 | Match: SGN-E546680 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C194188 | Clone name: TUS-70-C18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C103041 [cLHT-35-H13] | Trace: SGN-T172061 | EST: SGN-E358415 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C194188 [TUS-70-C18] | Trace: SGN-T350286 | EST: SGN-E549411 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E546680 | Length: 815 bp (908 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E546680 [] (trimmed)
GCACAAATATCATTTTTACTAAAGTAATCGAGATCCCAGCAAAGATAGCAGTATATAAAAACACCACGACCAAACAAAATGACAAACAGATCAAA
AATCCAAATTTAAGCAAGTCTCCATTATGTATAACCAACCAAGTGCTCAATGACAGCTAATATCAGTAAAAACATAGAACAAAGAAATACAATGA
TAGAGCAGTTGATGATTACAAACTTCTCCTCGGTAAACAGCAAGCATGACAACTTGTTAACGGCCACAACTATGTAAGGATGACAGTAATACACA
ATTATGCCTAGAGACTTTGTTCAATAAGATAGTCACCCAACCTTTCAACAATCATATTGCACTGTCCAGGAGTCATCGGCTCATCATATATTCCA
ATGATCAAAGCCTGGTTGGTCTTCTTAATGGTGATACCACCTGGACCCTTCTTCCCTCGGATCACAGCTTCTGGCTCTCCTTGAATCACCATGTA
TTTTGTTCCCCCAAGATACAAACCAGTTGGAGCAAGTGTTCCAGGTACCGTGAAGTCATTCATGATGCCTGTTATTTCTTCGGGCTTGAATATTT
AGCTAAGCTGCTATAGCTGTAACCTGAAACCTCAGCACAATTAATCAGAAATTATATCCCCTTCCTGTGATCCACATTGTTCCGAGCCAAAAGAA
AAGGGGGAAACCTGTTAAGAACTGGAAATTTTTGAATCAGACTGGCCCTCACAATAAAAGTTTAATTGGAGAGAAGTAGTTCTCGAGTTCTACCT
TTACAATTTGGTTCCCTTGTCTTGCTATTCTTTTTCACATCGATCTTATTACTCC
AATCCAAATTTAAGCAAGTCTCCATTATGTATAACCAACCAAGTGCTCAATGACAGCTAATATCAGTAAAAACATAGAACAAAGAAATACAATGA
TAGAGCAGTTGATGATTACAAACTTCTCCTCGGTAAACAGCAAGCATGACAACTTGTTAACGGCCACAACTATGTAAGGATGACAGTAATACACA
ATTATGCCTAGAGACTTTGTTCAATAAGATAGTCACCCAACCTTTCAACAATCATATTGCACTGTCCAGGAGTCATCGGCTCATCATATATTCCA
ATGATCAAAGCCTGGTTGGTCTTCTTAATGGTGATACCACCTGGACCCTTCTTCCCTCGGATCACAGCTTCTGGCTCTCCTTGAATCACCATGTA
TTTTGTTCCCCCAAGATACAAACCAGTTGGAGCAAGTGTTCCAGGTACCGTGAAGTCATTCATGATGCCTGTTATTTCTTCGGGCTTGAATATTT
AGCTAAGCTGCTATAGCTGTAACCTGAAACCTCAGCACAATTAATCAGAAATTATATCCCCTTCCTGTGATCCACATTGTTCCGAGCCAAAAGAA
AAGGGGGAAACCTGTTAAGAACTGGAAATTTTTGAATCAGACTGGCCCTCACAATAAAAGTTTAATTGGAGAGAAGTAGTTCTCGAGTTCTACCT
TTACAATTTGGTTCCCTTGTCTTGCTATTCTTTTTCACATCGATCTTATTACTCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E546680] | SGN-U593083 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T347555 [Download][View] | Facility Assigned ID: TUS70C18_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0050 | Quality Trim Threshold: 14.5 |
Working
