EST details — SGN-E539993
| Search information |
| Request: 539993 | Match: SGN-E539993 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C190297 | Clone name: TUS-60-A15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C79337 [cLES-8-J20] | Trace: SGN-T99187 | EST: SGN-E288667 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C190297 [TUS-60-A15] | Trace: SGN-T340865 | EST: SGN-E539990 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539993 | Length: 816 bp (877 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539993 [] (trimmed)
TTTGGAATTGCAGTACTTCGGACTGAAGCCGGAACAGGCACCTGTGATCATCATAATGGACGCTGATGAACAAAAGTATATTAAGGACCATGTGG
AACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTG
TGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAG
TCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGC
GTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACT
TGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATATGTAGTAGGAGAAAGAGGG
AGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGT
TCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCA
AAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTA
AACCTGATGCCATTGCTGCTTACTTGAAGGATTACAAGGTGATGCATCCTCTTCTTTTTCTTGGATATATTTTGGAATGAAAGCGTTGTTAATTG
TGAACAATATTCTGCACGGAAGGAAAGGCTTACTAACCTTTTTCCTCTAATTTTCCACATTGTTACAGGAAGGAAAACTGAAGCCACATGTGAAG
TCAGAGCCCATCCCTGAAGTCAATGACGAACCTGTTAAGGTGGTTGTTAGGGATACCCTCCAGGATATGGTTTACAAATCGGGAAAAAATGGTGC
GTGTCTGTCAATATTTTAATCTTTATTCGATGTCTTGGTTAAGAAAGAGTTGTTTCTTTGTTGTACCATTTCGTTCTCCCTCTTTGGTGTTTACT
TGCATTTCTTTACTAGTGTGTAAGGTCGTGATGAGGAGTTGGATGTCGTAAATTAACTGATTGTGGAACTATTATATGTAGTAGGAGAAAGAGGG
AGCAGTCATCAGCTAATTGCCCGCGGGTTTGACTTTAACAATAGTTGTGCTCTCCTAAATTATTATTCTTTTTGTCTGCTCAGTGCTGTTAGAGT
TCTATGCACCTTGGTGTGGCCACTGCAAGAGTCTGGCTCCAATTTTGGATGAAGTGGCTGTATCATTTGAAAGCGATCCTGATGTTCTCATTGCA
AAACTGGTAAGAACTTTTTTCATAAACTAAACATGGATATTTGATGCATGTATCTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539993] | SGN-U575292 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340868 [Download][View] | Facility Assigned ID: TUS60A15_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
