EST details — SGN-E539246
| Search information |
| Request: 539246 | Match: SGN-E539246 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189862 | Clone name: TUS-58-O12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C69787 [cLER-12-J21] | Trace: SGN-T94410 | EST: SGN-E283443 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189862 [TUS-58-O12] | Trace: SGN-T340118 | EST: SGN-E539243 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539246 | Length: 821 bp (872 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539246 [] (trimmed)
GCAGAAAGACACTTCTCCCCGGAAGGTGAATTAGAGCAGGCAAGAGAAGTAGAAGAAGAAATGGACGCAGGTGTAGTTGCTGCCCCCGCCCCGGC
CGCCGCCGTCGATGCAAGCAAAGAGAATAAGGTTCACACTGATGTCATGCTTTTCAATCGCTGGAGCTATGATGGAGTTGAGATCAATGACATGT
CTGTTGAGGATTACATCACCGCAACTGCTAACAAGCACCCAGTTTACATGCCACACACAGCTGGTAGATACCAGGCCAAGCGTTTCAGGAAGGCT
CAGTGCCCAATCGTTGAGAGGCTCACAAATTCTCTCATGATGCACGGAAGGAACAACGGAAAGAAGCTCATGGCTGTTCGTATTATTAAGCATGC
AATGGAGATCATTCATTTGTTGACTGACCAAAACCCAATTCAAGTCATTGTTGATGCTGTTATCAACAGTGGGCCAAGGGAAGATGCAACACGTA
TTGGTTCTGCTGGTGTTGTCAGACGTCAAGCTGTTGATATTTCTCCACTCCGTCGTGTTAACCAAGCAATTTATTTGCTGACAACTGGTGCACGT
GAGAGTGCTTTCAGGAACATCAAGACCATAGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCCAAGGGTTCTTCAAATAGCTATGCTATTAA
GAAGAAGGACGAGATTGAAAGGGTTGCCAAGGCCAATCGTTAAGAGATTGTTGTTGGAGCAACTTTTTCGAGAGACTTTTTGGTTATGTTATTTT
CTCAGTTCTGTTTTCATGTAGGCATTATAGCATCTGCTACTCCTTATGGATTTAGTTTCTT
CGCCGCCGTCGATGCAAGCAAAGAGAATAAGGTTCACACTGATGTCATGCTTTTCAATCGCTGGAGCTATGATGGAGTTGAGATCAATGACATGT
CTGTTGAGGATTACATCACCGCAACTGCTAACAAGCACCCAGTTTACATGCCACACACAGCTGGTAGATACCAGGCCAAGCGTTTCAGGAAGGCT
CAGTGCCCAATCGTTGAGAGGCTCACAAATTCTCTCATGATGCACGGAAGGAACAACGGAAAGAAGCTCATGGCTGTTCGTATTATTAAGCATGC
AATGGAGATCATTCATTTGTTGACTGACCAAAACCCAATTCAAGTCATTGTTGATGCTGTTATCAACAGTGGGCCAAGGGAAGATGCAACACGTA
TTGGTTCTGCTGGTGTTGTCAGACGTCAAGCTGTTGATATTTCTCCACTCCGTCGTGTTAACCAAGCAATTTATTTGCTGACAACTGGTGCACGT
GAGAGTGCTTTCAGGAACATCAAGACCATAGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCCAAGGGTTCTTCAAATAGCTATGCTATTAA
GAAGAAGGACGAGATTGAAAGGGTTGCCAAGGCCAATCGTTAAGAGATTGTTGTTGGAGCAACTTTTTCGAGAGACTTTTTGGTTATGTTATTTT
CTCAGTTCTGTTTTCATGTAGGCATTATAGCATCTGCTACTCCTTATGGATTTAGTTTCTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539246] | SGN-U577370 | Tomato 200607 | Build 2 | 131 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340121 [Download][View] | Facility Assigned ID: TUS58O12_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
