EST details — SGN-E538555
| Search information |
| Request: 538555 | Match: SGN-E538555 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189454 | Clone name: TUS-57-N12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C63255 [cLEM-24-O11] | Trace: SGN-T87447 | EST: SGN-E273241 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189454 [TUS-57-N12] | Trace: SGN-T348950 | EST: SGN-E548075 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538555 | Length: 712 bp (877 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E538555 [] (trimmed)
GATCATCTTCCATCCATGTCGATTTCGACCAAAATTCCTCATCCTCTCCATCACCCTAATTCACCATACCCCAAATCCTCAAAATCCTCTTTTTT
ATACTCAAAACCCACTAAATTAGCCTTCTTTAGATCCATTACCATCAAAAGAATTTCAACAAAATCTGTTTCTGCAACCCCAGCAGCAGCAGGAG
AAGCTTCTTCTTCATCTCTCCAACCCATTGAAGAGCTTCCAACGAAGCTTCAAGAAATGGTCAAGCTTTTTCAAGCAGTTGAGCAACCAAAGGCT
AAGTACGAGCAACTGTTGTTTTATGGCAAGAATTTAAAACCACTCGATGCCCAGTACAAGACTAGTGAAAATAAGGTTCAGGGTTGTGTTTCACA
GGTTTGGGTTAGGGCGTATTTTGATTCTGAGAAAAATGTTGTATTTGAGGCTGATTCTGATTCGGTACTTACTAAAGGTCTTGCTGCTTTGTTAG
TTCAGGGACTTTCTGGAAGACCTGTAGAAGAGATTTTAAAAGTTTCCCCTGATTTTGCTGTACTTTTGGGGTTGCAACAAAGCTTAACTCCTTCT
AGGAATAATGGGTTTTTGAATATGGTGAAGTTAATGCAGAAAAAAGCACTTCAATTGTATGTTGAAGAAGCTGAGAAAGGTGCTAATTCAGGGCA
GAGTGAAGTATCAAATGCCTCGTCGACTGAGTCTCTTGGTGTTAATG
ATACTCAAAACCCACTAAATTAGCCTTCTTTAGATCCATTACCATCAAAAGAATTTCAACAAAATCTGTTTCTGCAACCCCAGCAGCAGCAGGAG
AAGCTTCTTCTTCATCTCTCCAACCCATTGAAGAGCTTCCAACGAAGCTTCAAGAAATGGTCAAGCTTTTTCAAGCAGTTGAGCAACCAAAGGCT
AAGTACGAGCAACTGTTGTTTTATGGCAAGAATTTAAAACCACTCGATGCCCAGTACAAGACTAGTGAAAATAAGGTTCAGGGTTGTGTTTCACA
GGTTTGGGTTAGGGCGTATTTTGATTCTGAGAAAAATGTTGTATTTGAGGCTGATTCTGATTCGGTACTTACTAAAGGTCTTGCTGCTTTGTTAG
TTCAGGGACTTTCTGGAAGACCTGTAGAAGAGATTTTAAAAGTTTCCCCTGATTTTGCTGTACTTTTGGGGTTGCAACAAAGCTTAACTCCTTCT
AGGAATAATGGGTTTTTGAATATGGTGAAGTTAATGCAGAAAAAAGCACTTCAATTGTATGTTGAAGAAGCTGAGAAAGGTGCTAATTCAGGGCA
GAGTGAAGTATCAAATGCCTCGTCGACTGAGTCTCTTGGTGTTAATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538555] | SGN-U568078 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339430 [Download][View] | Facility Assigned ID: TUS57N12_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
