Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E399598

Search information 
Request: 399598Match: SGN-E399598
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183609Clone name: TUS-42-J23
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183609 is on microarray TOM1 spot ID 1-1-2.2.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183609 [TUS-42-J23] Trace: SGN-T196202 EST: SGN-E394876 Direction: 3' Facility: INRA
Clone: SGN-C183609 [TUS-42-J23] Trace: SGN-T196202 EST: SGN-E399401 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399598Length: 619 bp (874 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399598 [] (trimmed) GTGGAGCTAGGTAGGACCTTAGACCTGGCAGAATGTGCTTTGTGGATGCCATGCCAAGGAGGCCTGACTTTGCAACTTTCCCATAATTTAAACAA
TCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTATTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAAATC
CTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCAGAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAAT
GACTGGGCTGAACTGTCTACTAGAAGTTATGCGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAAGAAAGTGGCGTGAACATGAGTTAGAACT
TGTGCAAGTTGTCGCAGATCAGGTTGCTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGA
ATATTGCTTTGGATGTAGCTCGACAAGAAGCAGAGATGGCCATCCGTGCACGTAACGACTTCCTTGCTGTGATGAACCATGAAATGAGAACGCCC
ATGCATGCAGTTATTGCTCTGTGCTCTCTGCTTTTAGAAACAGACTTAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399598] SGN-U580538 Tomato 200607 Build 2 122 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200476 [Download][View] Facility Assigned ID: FA0AAD30CE12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0029 Quality Trim Threshold: 14.5