EST details — SGN-E399590

Search information 
Request: 399590Match: SGN-E399590
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183455Clone name: TUS-42-D13
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183455 is on microarray TOM1 spot ID 1-1-4.4.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C32466 [cLEG-1-M3] Trace: SGN-T64443 EST: SGN-E248380 Direction: 5' Facility: TIGR
Clone: SGN-C183455 [TUS-42-D13] Trace: SGN-T196190 EST: SGN-E394864 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E399590Length: 595 bp (921 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E399590 [] (trimmed) TTTGATGTATCAGTTCTTGATGTTGGAGATGGAGTATTTGAGGTACTTTCTACCTCACGGGACACTCTCTTGTGGAGGTGATGATTTTGATAAAA
GAATTGTGGACTGGCTTGCTGATACTTTTAGGAAACAATAAGGAATAGAGCTTCTTAATGACAAACAAGCGCTTCAACGTCTTACTGAAGCTGCT
GAGAAGGCAAAGATAGAATTGTCAACCTTGACTCAAACTAATATCAGTTTGCCATTCATCACTGCTACTGCAGATGGTCCGAAACATATTGACAC
AACATTTACAAGGGCCAAGTTTGAGGAGTTATGCTCAGACTTATTGGACAGGCTTAAGACACCAGTTGAAACTGCCTTGAAGGATGCCAGCCTTT
CCTTCAAAGATATTGATGAAATAGTTCTTGTTGGTGGATCAACACGAATACCGGCGGTTCAAAACCTTGTCCGCAAGATGACTGGTAAAGAGCCT
AATGTTTCTGTCAATCCTGATGAAGTGGTTGCTCTTGGAGCTTCAATTCAGGCTGGTATCTTGGCTGGAGATGTTAGTGACATCGTGTTATTAGA
TGAAACTCACCTGTCACTTGGTCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399590] SGN-U584210 Tomato 200607 Build 2 54 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200470 [Download][View] Facility Assigned ID: FA0AAD30CB07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0147 Quality Trim Threshold: 14.5