EST details — SGN-E399546
| Search information |
| Request: 399546 | Match: SGN-E399546 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172874 | Clone name: TUS-14-K16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172874 is on microarray TOM1 spot ID 1-1-1.3.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14191 [cLEC-7-C21] | Trace: SGN-T25370 | EST: SGN-E202088 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172874 [TUS-14-K16] | Trace: SGN-T195251 | EST: SGN-E393925 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172874 [TUS-14-K16] | Trace: SGN-T195691 | EST: SGN-E394365 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172874 [TUS-14-K16] | Trace: SGN-T195692 | EST: SGN-E394366 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399546 | Length: 578 bp (873 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399546 [] (trimmed)
CAGGAAATGTTCAGTCGTGATCACAAAGTTAAGCATGAGTTGCCCAACGAGAATAACCAACATGTGGTGCGAAGGAATCTGCAGACTTCTGATTG
TCCAAGGGCAGTCATTTCAGGGAACCTAAGTGCAGTAAATGCCTGTCAAGGAGATTTTAAAGAAAATACCACAAAGAATGGACAGGGTAAAAATC
TCAGTCGGACTTATGCTGCTGATGTGTCCAAGTGCTTGGAGGAAAATGCTATTTGCACAAAGGAACATGACACTACCACCATCCTTCAAAAGAAT
GAAACGACACTTGCTGAAACTGTTCTCAGGAAAACAACAATCCCTGAAGCAAGTGCAAACAATACTTCATCAGATTCAGAAGATTTTCTTTATGA
GAGCGATGAAGACATACCCTACTTTTCTGATGTTGAAGCTTTGATCCTTGATATGGATTTGAGTCCTAATGGACAGGATATGTATTCCAGTAAGA
GAGCCAAAGAGTATCAGCATGAAGATTTTGTTAGAAAGATAATCAGGCTAGAGCAGGCTGATCATGCTTGTTTACAGAGAAAGATTGCTGTGCGT
GGAGCTTT
TCCAAGGGCAGTCATTTCAGGGAACCTAAGTGCAGTAAATGCCTGTCAAGGAGATTTTAAAGAAAATACCACAAAGAATGGACAGGGTAAAAATC
TCAGTCGGACTTATGCTGCTGATGTGTCCAAGTGCTTGGAGGAAAATGCTATTTGCACAAAGGAACATGACACTACCACCATCCTTCAAAAGAAT
GAAACGACACTTGCTGAAACTGTTCTCAGGAAAACAACAATCCCTGAAGCAAGTGCAAACAATACTTCATCAGATTCAGAAGATTTTCTTTATGA
GAGCGATGAAGACATACCCTACTTTTCTGATGTTGAAGCTTTGATCCTTGATATGGATTTGAGTCCTAATGGACAGGATATGTATTCCAGTAAGA
GAGCCAAAGAGTATCAGCATGAAGATTTTGTTAGAAAGATAATCAGGCTAGAGCAGGCTGATCATGCTTGTTTACAGAGAAAGATTGCTGTGCGT
GGAGCTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399546] | SGN-U565502 | Tomato 200607 | Build 2 | 9 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200446 [Download][View] | Facility Assigned ID: FA0AAD2BF08RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.953 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
