EST details — SGN-E399531
| Search information |
| Request: 399531 | Match: SGN-E399531 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172967 | Clone name: TUS-14-O13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172967 is on microarray TOM1 spot ID 1-1-4.3.20.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14384 [cLEC-7-L7] | Trace: SGN-T25316 | EST: SGN-E202034 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172967 [TUS-14-O13] | Trace: SGN-T195609 | EST: SGN-E394283 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172967 [TUS-14-O13] | Trace: SGN-T195609 | EST: SGN-E398994 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172967 [TUS-14-O13] | Trace: SGN-T195765 | EST: SGN-E394439 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172967 [TUS-14-O13] | Trace: SGN-T199441 | EST: SGN-E398115 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172967 [TUS-14-O13] | Trace: SGN-T199544 | EST: SGN-E398218 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399531 | Length: 635 bp (833 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399531 [] (trimmed)
ATATGAAACGTTTTTTTAATTATTTGGAATACATATTTCGATATTATTATAATTGGGACAAGTTAGTCCTGCAAGTTAAAACCTATGCAACAACA
TAACTATGTTAATACAGAATAATGTGAAGACTGCAAATGATCACAAGTCAATGGCTGGAAAATACAGAAAATCTTTGGGTAAGCCCCAAACCCAC
CTACCAATAGCACCATACAAAATCTTCCTAAATACACAACTGGATAATCACCCTTGCTGAGTAAGGTCTTTGTGACTATACACAATTGATTTATC
ACCATCAACAATTTGTCCACTTCCCCTTGCAAGCCATTTAGTTGTTAGCAATCCTTCAACTCCAACTGGGCCACGAGCATGAATACGACCAGTAC
TAATGCCCACCTCTGCACCAAGTCCAAAGCGGAATCCATCACTAAATCTTGTACTTGCGTTGTGAAATACAGCAGCACTGTCAACCTGACGTAGG
AGGGGGGGTCAGCAACTTCCTGATCTTCAGTAATGATGCTATCGGTGTGGGCACTTCCATGCTGATGTATATGATCTATCGCAGCATATACATCT
TCAACAACTTCCACAGTGCCAACTAGTGAACTATATTCGTGACGAAATGTACGTGCCTCTGGAAT
TAACTATGTTAATACAGAATAATGTGAAGACTGCAAATGATCACAAGTCAATGGCTGGAAAATACAGAAAATCTTTGGGTAAGCCCCAAACCCAC
CTACCAATAGCACCATACAAAATCTTCCTAAATACACAACTGGATAATCACCCTTGCTGAGTAAGGTCTTTGTGACTATACACAATTGATTTATC
ACCATCAACAATTTGTCCACTTCCCCTTGCAAGCCATTTAGTTGTTAGCAATCCTTCAACTCCAACTGGGCCACGAGCATGAATACGACCAGTAC
TAATGCCCACCTCTGCACCAAGTCCAAAGCGGAATCCATCACTAAATCTTGTACTTGCGTTGTGAAATACAGCAGCACTGTCAACCTGACGTAGG
AGGGGGGGTCAGCAACTTCCTGATCTTCAGTAATGATGCTATCGGTGTGGGCACTTCCATGCTGATGTATATGATCTATCGCAGCATATACATCT
TCAACAACTTCCACAGTGCCAACTAGTGAACTATATTCGTGACGAAATGTACGTGCCTCTGGAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399531] | SGN-U575897 | Tomato 200607 | Build 2 | 33 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195765 [Download][View] | Facility Assigned ID: FA0AAD2AH07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
