EST details — SGN-E399418
| Search information |
| Request: 399418 | Match: SGN-E399418 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183689 | Clone name: TUS-42-N7 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183689 is on microarray TOM1 spot ID 1-1-2.2.1.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32394 [cLEG-1-E19] | Trace: SGN-T64367 | EST: SGN-E248304 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183689 [TUS-42-N7] | Trace: SGN-T1774 | EST: SGN-E378618 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C183689 [TUS-42-N7] | Trace: SGN-T196103 | EST: SGN-E394777 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183689 [TUS-42-N7] | Trace: SGN-T200384 | EST: SGN-E399419 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399418 | Length: 522 bp (960 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399418 [] (trimmed)
GCAAATCTCTTAGTTGTGAATCATAAAACTGACTTACACATGAAATTTCATATCTGGATAAGAAGCTTTTACATTTACTAGGTCTCAATCCAGAT
ACAAGCAGAGAGATTCTGCTTTTATTCGCTATTTGCTTAACAAAATGAAAGGAAAGTTCAAGCTAGTAATTAGAAATCAATAGAACTTCTATGCA
CCCTTAGTTATTGCATCTAAAAGCTATTGTATGTCCTTGAATCAAACTATGAGCAGTTAAAACTAATATGAAGTCTTCGTCTTCAGAGTAGAACT
GCTGCTGCATAAACAAGCTGGCTCCAATTATTAAGAAGTCCAGGAGTACTGCGCCAATGATTGCTACGTTCACTTGAATGCTGGCTGTTTTGAGC
TGAAGGTCTTCACATACGTCCACAAATGTACAGTTAATTTCAGTGGAAAGGAAGAAGATTAAAAGGAGAAAATTATATGAGGTTTTTCCTCCTCA
CATAATTAGGGAATGCGTAAAGAAACTGGTTCACTGTATCCAGGTAA
ACAAGCAGAGAGATTCTGCTTTTATTCGCTATTTGCTTAACAAAATGAAAGGAAAGTTCAAGCTAGTAATTAGAAATCAATAGAACTTCTATGCA
CCCTTAGTTATTGCATCTAAAAGCTATTGTATGTCCTTGAATCAAACTATGAGCAGTTAAAACTAATATGAAGTCTTCGTCTTCAGAGTAGAACT
GCTGCTGCATAAACAAGCTGGCTCCAATTATTAAGAAGTCCAGGAGTACTGCGCCAATGATTGCTACGTTCACTTGAATGCTGGCTGTTTTGAGC
TGAAGGTCTTCACATACGTCCACAAATGTACAGTTAATTTCAGTGGAAAGGAAGAAGATTAAAAGGAGAAAATTATATGAGGTTTTTCCTCCTCA
CATAATTAGGGAATGCGTAAAGAAACTGGTTCACTGTATCCAGGTAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399418] | SGN-U571214 | Tomato 200607 | Build 2 | 120 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196103 [Download][View] | Facility Assigned ID: FA0AAD30CG04FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.951 | Expected Error Rate: 0.0023 | Quality Trim Threshold: 14.5 |
Working
