EST details — SGN-E399335
| Search information |
| Request: 399335 | Match: SGN-E399335 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183405 | Clone name: TUS-42-B11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183405 is on microarray TOM1 spot ID 1-1-6.2.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C19870 [cLED-28-F9] | Trace: SGN-T55849 | EST: SGN-E241371 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183405 [TUS-42-B11] | Trace: SGN-T195070 | EST: SGN-E393744 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183405 [TUS-42-B11] | Trace: SGN-T196063 | EST: SGN-E394737 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183405 [TUS-42-B11] | Trace: SGN-T196063 | EST: SGN-E399336 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399335 | Length: 496 bp (934 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399335 [] (trimmed)
AAAGTTAAATGGACAATAGCCTTGCTATTTTCATTATTTAGATGCTTAAAACATTAGCATAGTAAAAATTACAAAAACACCAACACACACAAAGA
AAAAAGGGAAATAAAGTAGAAATGTAGTGTTTGGCAAATCTAAAATTAAGTGCCAAACATCCAACACAACTCTAACAACATAATTCAAAGAGACT
TTTTTTTCTTCTCAAATACTTATATATACAATTTTCAATTCTTCATGATAATTGTACTAATTAAGCATTGCTCCTGAATGAACCAAGTGCTTTAA
CAGCTCCAGCCCTCAAAATAAACTGATGATAAAATGCAGCAATTGCAGCACCAATAAATGGTCCAACCCAAAATATCCATTGATCATCCCAAGCT
TTGTTATGTCCATAAACAACAGCAGCACCAAAACTCCTTGCAGGATTAATTCCAGTTCCAGTTACAGGAATTGTAGCCAAGTGAACCAAAAACAC
CCGCACATCCAAGGGGTAGAG
AAAAAGGGAAATAAAGTAGAAATGTAGTGTTTGGCAAATCTAAAATTAAGTGCCAAACATCCAACACAACTCTAACAACATAATTCAAAGAGACT
TTTTTTTCTTCTCAAATACTTATATATACAATTTTCAATTCTTCATGATAATTGTACTAATTAAGCATTGCTCCTGAATGAACCAAGTGCTTTAA
CAGCTCCAGCCCTCAAAATAAACTGATGATAAAATGCAGCAATTGCAGCACCAATAAATGGTCCAACCCAAAATATCCATTGATCATCCCAAGCT
TTGTTATGTCCATAAACAACAGCAGCACCAAAACTCCTTGCAGGATTAATTCCAGTTCCAGTTACAGGAATTGTAGCCAAGTGAACCAAAAACAC
CCGCACATCCAAGGGGTAGAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399335] | SGN-U579836 | Tomato 200607 | Build 2 | 21 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195070 [Download][View] | Facility Assigned ID: FA0AAD30CA06FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.900 | Expected Error Rate: 0.0016 | Quality Trim Threshold: 14.5 |
Working
