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EST details — SGN-E399329

Search information 
Request: 399329Match: SGN-E399329
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183730Clone name: TUS-42-O24
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183730 is on microarray TOM1 spot ID 1-1-1.3.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183730 [TUS-42-O24] Trace: SGN-T195066 EST: SGN-E393740 Direction: 3' Facility: INRA
Clone: SGN-C183730 [TUS-42-O24] Trace: SGN-T195067 EST: SGN-E393741 Direction: 5' Facility: INRA
Clone: SGN-C183730 [TUS-42-O24] Trace: SGN-T199661 EST: SGN-E398335 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399329Length: 643 bp (857 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399329 [] (trimmed) GTGGACCTATGAAGGACCTTATACCTGGTATAATGTGCTTTGTGGATGCCATGCCAAGGAGGCCTGACTTTGCAACTTTCCCATAATTTAAACAA
TCTAATACCTCTGGGATCTACTGTGCCAATTAATCTTCCTATTATCAATGAAATTTTTAGTAGCCCTGAAGCAATACAAATTCCACATACAATTC
CTTTGGCAAGGATGAGGAATACTGTTGGTAGATATATTCCACCATAAGTAGTTGCTGTTCGTGTACCGCTTTTACACCTCTCAAATTTTACTAAT
GACTGGGCTGAACTGTCTACTATAATTTATGCGGTTATGGTTCTGGTTCTCCCGATGAATGGCTTAATAAAGTGGCGTGAACATGAGTTAGAACT
TGTGCAAGTTGTCGCAGATCAGGTTGCTGTCGCTCTTTCACATGCTGCAATTTTAGAAGATTCCATGCGAGCCCATGATCAGCTCATGGAACAGA
ATATTGCTTTGGATGTAGCTCGACAAGAACCAGAGATGGCCATCCGTGCACGTAACGACTTCCTTGCTGTGATGAACCATGAAATGAGAACGCCC
ATGCATGCAGTTATTGCTCTGTGCTCTCTGCTTTTACAAACAGACTTTACTCCAGAACAAAAAGTTATGATTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399329] SGN-U580538 Tomato 200607 Build 2 122 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199661 [Download][View] Facility Assigned ID: FA0AAD30BH12RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.975 Expected Error Rate: 0.0187 Quality Trim Threshold: 14.5