EST details — SGN-E399310
| Search information |
| Request: 399310 | Match: SGN-E399310 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183676 | Clone name: TUS-42-M18 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183676 is on microarray TOM1 spot ID 1-1-7.1.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T196048 | EST: SGN-E394722 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T196049 | EST: SGN-E394723 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183676 [TUS-42-M18] | Trace: SGN-T200325 | EST: SGN-E399311 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399310 | Length: 687 bp (928 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399310 [] (trimmed)
GTATAAATTCGATAGTTACATTTTCAAGATACTCCAGTACTCACTTTACGAGCATTGAATTAGGTTAGTTACAAGACAAACTGTGCCATTTGGAG
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCTAGACCTTCCCCTCCAGTACTTCGATTTGACGTAGGCCGTG
ACTCTGCAAATTTGGTGAATACTAGTGGTATATCTTGTGGGCTAATTCCACACCCAGTATCTCTAACCTGGACACGCAAATAAAACTGGCCATCA
CTTGGCATAGGGAACATTTCAGGAGGATGACAATCTCTCGCATACTCTGGTTTGGCAACTGAAGCCTCAATTGAAATATGTCCTTCTTTAGTGAA
CTTCACAGCATTTCCCGCCACG
TGTACAGAACAGTGAAGAAATCTCAAATTCACTAGTCATGATTTAATGTTCTTTGTCACACCAATGTCCTTTTGTCATTTACAGACTTCTTTGAT
AGCGTTGAGCATTCACAGACATCCCACCATCATCTCCACGGAACTGTCTATACCTGAAGAGATCATCGCTACCTTTGTTCAATCTGCCTCTGGGA
GGCATAGGTAGCAGAGGTAATGCATTTGGATGGTGACAGATTCCGAGTTTCACTACAAACGTGACAGTGGTTCCCTTTCCAGGGCCCTCACTCTC
AATCCAAATGTTACCTTTCATAAGTTGAATAAATCGTCTGCAAATGGCAAGCCCTAGACCTTCCCCTCCAGTACTTCGATTTGACGTAGGCCGTG
ACTCTGCAAATTTGGTGAATACTAGTGGTATATCTTGTGGGCTAATTCCACACCCAGTATCTCTAACCTGGACACGCAAATAAAACTGGCCATCA
CTTGGCATAGGGAACATTTCAGGAGGATGACAATCTCTCGCATACTCTGGTTTGGCAACTGAAGCCTCAATTGAAATATGTCCTTCTTTAGTGAA
CTTCACAGCATTTCCCGCCACG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399310] | SGN-U580538 | Tomato 200607 | Build 2 | 122 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200324 [Download][View] | Facility Assigned ID: FA0AAD30BG09FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.981 | Expected Error Rate: 0.0025 | Quality Trim Threshold: 14.5 |
Working
