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EST details — SGN-E399280

Search information 
Request: 399280Match: SGN-E399280
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183580Clone name: TUS-42-I18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183580 is on microarray TOM1 spot ID 1-1-7.1.1.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183580 [TUS-42-I18] Trace: SGN-T196141 EST: SGN-E394815 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399280Length: 629 bp (931 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E399280 [] (trimmed) CAGATCAACTCGACCTCAATTTTTTTTACCTCTTGCCAGCGACACCGTTTAGCTACAAATGGCTGCAGCTACCTCTCTATACGTCTCCGAGATGC
TCGGAAGTCCGGTCAAGTTTAGCGGTGTTGCAAGGCCTGCTGCTCCATCTCCATCCTCCTCTGCTACCTTCAAAACTGTTGCCCTTTTCAAAAAG
AAGGCGGCTGCAGCTCCTGCCAAAGCTAAGGCTGCCGCTGTCTCCCCTGCTGACGATGAGCTCGCCAAGTGGTACGGACCTGACAGAAGAATTTT
CCTGCCCGAGGGTCTATTGGACAGATCAGAAATCCCCGAGTACTTGAACGGAGAAGTTCCCGGAGACTACGGTTACGATCCTTTTGGTTTGAGCA
AGAAGCCAGAAGACTTCGCCAAATATCAGGCATATGAGCTGATCCACGCCAGATGGGCTATGCTCGGTGCTGCTGGGTTTATTATCCCAGAAGCC
TTCAACAAATTTGGTGCCAACTGTGGTCCTGAAGCTGTTTGGTTCAAGACTGGAGCTTTACTTCTAGACGGAAACACATTGAATTACTTCGGAAA
GAACATTCCCATCAACCTTATTCTTGCTGTCGTCGCAGAGGTTGTTCCTGTTGGTGGTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399280] SGN-U580870 Tomato 200607 Build 2 302 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196141 [Download][View] Facility Assigned ID: FA0AAD30BE09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.988 Expected Error Rate: 0.0052 Quality Trim Threshold: 14.5