EST details — SGN-E399276
| Search information |
| Request: 399276 | Match: SGN-E399276 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183574 | Clone name: TUS-42-I12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183574 is on microarray TOM1 spot ID 1-1-5.1.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C21264 [cLED-32-H6] | Trace: SGN-T57077 | EST: SGN-E240071 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183574 [TUS-42-I12] | Trace: SGN-T196032 | EST: SGN-E394706 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183574 [TUS-42-I12] | Trace: SGN-T196139 | EST: SGN-E394813 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183574 [TUS-42-I12] | Trace: SGN-T200306 | EST: SGN-E399275 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399276 | Length: 661 bp (929 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399276 [] (trimmed)
TTTTACTTTGCTCTAAAAGATATTAAATTTGTTTATATTTAAGCATTATGGTGTCTCTAAATAGGAACCTCATTTTGGCATTTTTGTGTGTTTTA
TTGTGCTTTGTTGTTAGCTTTAGCAATGCCCAATTATCAGCCAATTTTTATGGGACGTCGTGCCCTAATCTGCAGACAATTGTAAGAAATGCAAT
GACACAAGCTGTGAATAGAGAGGCCAGACTTGGTGCCTCTATTCTTCGATTGTTCTTCCATGATTGCTTCGTTAACGGGTGCGATGCATCAATAC
TACTGGATGACACATCAACTTTTATAGGAGAAAAGAATGCAAATCCAAACAGAAATTCAGCAAGAGGATATGAAGTGATAGACACCATTAAAACT
CAAGTTGAAGCTGCTTGTCCTAACGTTATCTCTTGTGCGGATATTCTTGCTCTTGCTGCTCGAGAAGGCACCGTACTGCTTGGAGGGCCATCATG
GGCAGTGCCATTGGGCCGAAGAGACGCAAGGACCGCGAGCCAAAGCGCCGCCAACACCCAAATCCCCGCACCATCTTCCAGTCTTGCAACTTTAA
TTTCCATGTTCTCCGCCAAAGGCCCTAATGCGCGTGACATGACGGCACTATCCGGCAGCCACACGATTGGCCAGGCTCGGTGCACCACTTT
TTGTGCTTTGTTGTTAGCTTTAGCAATGCCCAATTATCAGCCAATTTTTATGGGACGTCGTGCCCTAATCTGCAGACAATTGTAAGAAATGCAAT
GACACAAGCTGTGAATAGAGAGGCCAGACTTGGTGCCTCTATTCTTCGATTGTTCTTCCATGATTGCTTCGTTAACGGGTGCGATGCATCAATAC
TACTGGATGACACATCAACTTTTATAGGAGAAAAGAATGCAAATCCAAACAGAAATTCAGCAAGAGGATATGAAGTGATAGACACCATTAAAACT
CAAGTTGAAGCTGCTTGTCCTAACGTTATCTCTTGTGCGGATATTCTTGCTCTTGCTGCTCGAGAAGGCACCGTACTGCTTGGAGGGCCATCATG
GGCAGTGCCATTGGGCCGAAGAGACGCAAGGACCGCGAGCCAAAGCGCCGCCAACACCCAAATCCCCGCACCATCTTCCAGTCTTGCAACTTTAA
TTTCCATGTTCTCCGCCAAAGGCCCTAATGCGCGTGACATGACGGCACTATCCGGCAGCCACACGATTGGCCAGGCTCGGTGCACCACTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399276] | SGN-U566251 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196032 [Download][View] | Facility Assigned ID: FA0AAD30BE06RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0050 | Quality Trim Threshold: 14.5 |
Working
