EST details — SGN-E399248
| Search information |
| Request: 399248 | Match: SGN-E399248 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183480 | Clone name: TUS-42-E14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183480 is on microarray TOM1 spot ID 1-1-3.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183480 [TUS-42-E14] | Trace: SGN-T195022 | EST: SGN-E393696 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183480 [TUS-42-E14] | Trace: SGN-T195023 | EST: SGN-E393697 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183480 [TUS-42-E14] | Trace: SGN-T199654 | EST: SGN-E398328 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183480 [TUS-42-E14] | Trace: SGN-T200289 | EST: SGN-E399247 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399248 | Length: 679 bp (937 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399248 [] (trimmed)
AGCAACAAATAATACTCAAACCTATCTTTCACACGTTAAAATTTCAAAAGAATCACCAATAAACAAACATATTACAAAGTGCCCTCCAACTTCAG
CTTTCCATTTCCTTGAGCTCATTTTTATGAACCACAACAAGCTGATTTCTGGGAAGTTTGACTACCTCCAGCTCCTGCTTCTGGTTGATTAATCT
TGAGTGTTGACGGCTCGGCCTTGGAGTCTGTGTCTGCAAGCCTTTGTTTTATATCTCTTGCTATTGAGAAGAAAACTTGTTCCACGTTAAGATTT
GTCTTTGCACTAGTTTCAAAAAACTTAATTCCGTACTCATCTGCAAGTGCTTGACCCTTTGCTGTAGGGACAGCCCTCTTGCTTTCATCCATGTC
GGCCTTGTTCCCTACAAGTATTTTGTTAACATTGTCTGAGGCATGCTGCTCAATGTTACGAATCCAGTTCCTGATGTTGTTAAAGGAGGATTCAT
CAGTTACATCATACACCAACAGTATACCCATGGCTCCACGATAGTAAGCAGTAGTGATGGTCCGAAAACGTTCCTGACCAGCTGTATCCCATATC
TGAAGCTTGATTCTTTTTCCATCAAGCTCAATGGTTCGAATTTTAAAATCATTTCCAATAGTTGTGATGAAGCTTGTGGTGGAAGGACCATCAAA
AAAACGTAAAAAAA
CTTTCCATTTCCTTGAGCTCATTTTTATGAACCACAACAAGCTGATTTCTGGGAAGTTTGACTACCTCCAGCTCCTGCTTCTGGTTGATTAATCT
TGAGTGTTGACGGCTCGGCCTTGGAGTCTGTGTCTGCAAGCCTTTGTTTTATATCTCTTGCTATTGAGAAGAAAACTTGTTCCACGTTAAGATTT
GTCTTTGCACTAGTTTCAAAAAACTTAATTCCGTACTCATCTGCAAGTGCTTGACCCTTTGCTGTAGGGACAGCCCTCTTGCTTTCATCCATGTC
GGCCTTGTTCCCTACAAGTATTTTGTTAACATTGTCTGAGGCATGCTGCTCAATGTTACGAATCCAGTTCCTGATGTTGTTAAAGGAGGATTCAT
CAGTTACATCATACACCAACAGTATACCCATGGCTCCACGATAGTAAGCAGTAGTGATGGTCCGAAAACGTTCCTGACCAGCTGTATCCCATATC
TGAAGCTTGATTCTTTTTCCATCAAGCTCAATGGTTCGAATTTTAAAATCATTTCCAATAGTTGTGATGAAGCTTGTGGTGGAAGGACCATCAAA
AAAACGTAAAAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399248] | SGN-U578498 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199654 [Download][View] | Facility Assigned ID: FA0AAD30BC07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0019 | Quality Trim Threshold: 14.5 |
Working
