EST details — SGN-E399246
| Search information |
| Request: 399246 | Match: SGN-E399246 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183478 | Clone name: TUS-42-E12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183478 is on microarray TOM1 spot ID 1-1-5.1.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C18227 [cLED-22-I2] | Trace: SGN-T54168 | EST: SGN-E238102 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183478 [TUS-42-E12] | Trace: SGN-T196017 | EST: SGN-E394691 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183478 [TUS-42-E12] | Trace: SGN-T199419 | EST: SGN-E398093 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183478 [TUS-42-E12] | Trace: SGN-T200288 | EST: SGN-E399245 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399246 | Length: 617 bp (918 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399246 [] (trimmed)
CAGAGGGTGTTTTCATTCAAGCTTAGAGGAGCTTACAACATGATGAGTAACCTCTCAAGGGAGGAATTAGATAAAGGGGTTATAACAGCATCAGC
TGGAAATCATGCACAAGGTGTAGCATTAGCTGGTCAAAGACTTAACTGTGTAGCTAAAATTGTCATGCCTACAACCACCCCACAAATCAAGATTG
ATGCGGTTAGAGCCCTGGGAGGTGATGTAGTTCTTTATGGTAAAACATTTGATGAAGCTCAAACACACGCGCTGGAATTGAGTGAAAAAGACGGG
CTCAAATACATCCCACCATTCGATGATCCAGGAGTCATCAAAGGCCAAGGTACAATTGGAACAGAGATAAACCGTCAACTGAAGGACATTCACGC
TGTGTTTATACCTGTTGGTGGTGGGGGTTTGATAGCTGGTGTTGCTACCTTTTTCAAACAAATTGCCCCAAATACAAAAATTATTGGAGTTGAGC
CATATGGTGCAGCTTCAATGACATTGTCATTGCATGAAGGACATAGAGTGAAATTATCAAATGTTGATACTTTTGCTGACGGTGTAGCTGTTGCA
CTAGTTGGTGAATACACTTTTGCAAAATGCCAAAAGTTAATTGATGG
TGGAAATCATGCACAAGGTGTAGCATTAGCTGGTCAAAGACTTAACTGTGTAGCTAAAATTGTCATGCCTACAACCACCCCACAAATCAAGATTG
ATGCGGTTAGAGCCCTGGGAGGTGATGTAGTTCTTTATGGTAAAACATTTGATGAAGCTCAAACACACGCGCTGGAATTGAGTGAAAAAGACGGG
CTCAAATACATCCCACCATTCGATGATCCAGGAGTCATCAAAGGCCAAGGTACAATTGGAACAGAGATAAACCGTCAACTGAAGGACATTCACGC
TGTGTTTATACCTGTTGGTGGTGGGGGTTTGATAGCTGGTGTTGCTACCTTTTTCAAACAAATTGCCCCAAATACAAAAATTATTGGAGTTGAGC
CATATGGTGCAGCTTCAATGACATTGTCATTGCATGAAGGACATAGAGTGAAATTATCAAATGTTGATACTTTTGCTGACGGTGTAGCTGTTGCA
CTAGTTGGTGAATACACTTTTGCAAAATGCCAAAAGTTAATTGATGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399246] | SGN-U570558 | Tomato 200607 | Build 2 | 227 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T196017 [Download][View] | Facility Assigned ID: FA0AAD30BC06RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
