EST details — SGN-E399213

Search information 
Request: 399213Match: SGN-E399213
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183378Clone name: TUS-42-A8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183378 is on microarray TOM1 spot ID 1-1-1.1.2.19 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23171 [cLED-4-K8] Trace: SGN-T49259 EST: SGN-E231490 Direction: 5' Facility: TIGR
Clone: SGN-C183378 [TUS-42-A8] Trace: SGN-T195004 EST: SGN-E393678 Direction: 3' Facility: INRA
Clone: SGN-C183378 [TUS-42-A8] Trace: SGN-T195005 EST: SGN-E393679 Direction: 5' Facility: INRA
Clone: SGN-C183378 [TUS-42-A8] Trace: SGN-T196000 EST: SGN-E394674 Direction: 5' Facility: INRA
Clone: SGN-C183378 [TUS-42-A8] Trace: SGN-T196000 EST: SGN-E399214 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399213Length: 474 bp (936 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E399213 [] (trimmed) ACGTTCGAATATGGTATCCAATTATTTGGTTTGGAGTTTATAGTTTACAAAATAAGGAACTTACTTGTAATTTTTAATGAAACCCCAAAACAGGG
TTTTGGAAAATCAAACAAAAATCCAATATTACTTTGGATTTTGAAACAAAATACAAAAAATAAAAACACATAATGAAACTACAAGTACAGTATTA
GTTAGTAATTATTATTATTATTATTATTAGCGCGCTAGTTTCAGATCTCTTTTTCAGTGTCTTCTTGTTTGTCACCGTTCCATAAGTCTGAGAGT
GATGGAAGCTTGATCTCGCCGCTATGTGAGAGTGGAATTGTGAAATCTCCGATGACTGGAAGATCAATAGCGAGACCTAATTCCAGTTTATAGTC
AATGTCCCAATCTTTACCAATATCCTTACCCAAACTCACTAGCATACTGTGAGGTACCTTCACTGGCACATCTAAAATAATTGTGTCATTTGCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399213] SGN-U578486 Tomato 200607 Build 2 22 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200266 [Download][View] Facility Assigned ID: FA0AAD30BA04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.945 Expected Error Rate: 0.0078 Quality Trim Threshold: 14.5