EST details — SGN-E399206
| Search information |
| Request: 399206 | Match: SGN-E399206 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183725 | Clone name: TUS-42-O19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183725 is on microarray TOM1 spot ID 1-1-6.3.1.9 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C34186 [cLEG-30-A3] | Trace: SGN-T69001 | EST: SGN-E255275 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183725 [TUS-42-O19] | Trace: SGN-T199411 | EST: SGN-E398085 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183725 [TUS-42-O19] | Trace: SGN-T199647 | EST: SGN-E398321 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183725 [TUS-42-O19] | Trace: SGN-T199647 | EST: SGN-E399207 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399206 | Length: 682 bp (899 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399206 [] (trimmed)
ATGGAATCATACATCAAAATTTATTTTTAACATATATTATAATGTTTTTACAACAATCCATCTATATTGTGGCATGTCTTTGAAAGCAAGTACAC
ATAGACAATATATTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAAT
TATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAGATGACGAAGCATCCATTGTGGCATCACAGTATTATTAGCTGC
ACCTTGCTGCTGTGAAGAACTACCTCCTTCCACTTCCCCATTATCTATTACATTAGTACTCTGGTATGCTTCCCCAAGGTGAGGAGAGTCCAGTT
GTTGTGGCAAAACAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTG
TTTTGCTCCTGCAATGCTCTGTCCTTTTTTTGAAGCACAGAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAGAGCTGA
ATCAAGCTGGTGCTCCAGATTCTGAAGTTCCTTCATACTTAAGGACTCCAAATCTTCTCCCACATAAATGCTTTTGGTTCCTCTGCCAAAACTCA
AGTCTGGCCTTAAGTTT
ATAGACAATATATTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAAT
TATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAGATGACGAAGCATCCATTGTGGCATCACAGTATTATTAGCTGC
ACCTTGCTGCTGTGAAGAACTACCTCCTTCCACTTCCCCATTATCTATTACATTAGTACTCTGGTATGCTTCCCCAAGGTGAGGAGAGTCCAGTT
GTTGTGGCAAAACAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTG
TTTTGCTCCTGCAATGCTCTGTCCTTTTTTTGAAGCACAGAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAGAGCTGA
ATCAAGCTGGTGCTCCAGATTCTGAAGTTCCTTCATACTTAAGGACTCCAAATCTTCTCCCACATAAATGCTTTTGGTTCCTCTGCCAAAACTCA
AGTCTGGCCTTAAGTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399206] | SGN-U578128 | Tomato 200607 | Build 2 | 67 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200263 [Download][View] | Facility Assigned ID: FA0AAD30AH10FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.943 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
