EST details — SGN-E399009
| Search information |
| Request: 399009 | Match: SGN-E399009 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172626 | Clone name: TUS-14-A8 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172626 is on microarray TOM1 spot ID 1-1-1.1.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C172626 [TUS-14-A8] | Trace: SGN-T195200 | EST: SGN-E393874 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172626 [TUS-14-A8] | Trace: SGN-T195357 | EST: SGN-E394031 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172626 [TUS-14-A8] | Trace: SGN-T195645 | EST: SGN-E394319 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172626 [TUS-14-A8] | Trace: SGN-T195645 | EST: SGN-E399010 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172626 [TUS-14-A8] | Trace: SGN-T195771 | EST: SGN-E394445 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399009 | Length: 677 bp (884 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E399009 [] (trimmed)
ATGAATACGTATAAGCATCAACAATATAGGCTACATGGAATCTTTCATCTTGAATGAACAAAAAAACAAGGTACTAAATGGATTAGCATTCGTTG
ATGACACATCACAGAGAAAGGTTGCAGCAAGTAGGACCAGGCAAAAAATATTTACTTTTCCAGCAACTGGTAAATCTATAAATATGAACAGCAGT
CCCCTCTATTATCCAGGAAAATTTCTCGAGCCCCCAAAAGACATGGCTTTCCAAGACTCAACCAACTTCTGTAGACAATTGTCTGGTCAACTTCA
TGCAGCATACGTAACCTCGCAATCAAGGAAAACAAAACTGTGTGCTACCATCCTCCTCCGTTTCAATGTTTTCTTGACGTTCTAGCAATGTAGTC
ATGCTTGAGAAGGTTTGCTCTCAAAAGCATTGATCTCACATCCCGATCGAATTCCTTGCCTGTCTGCAGCACCTTCTGGAAGGTTGCATTTCTCT
GATCAGGATGTCGTGCATACAAAATTTTGTTGTGTGAGTCAATTCGAGCCTGAATTTGGTTGTCAGTGATCAAAGATTCAAGTTCCTTTTCCAAC
CCGGCAACACTCGTCTTGAAAGCATTAACCATCATATTCAAATCAACCGAGACAAATGGGTGGGTATACTGTATCAAAGCTTTGCTACGGATTTG
ATCATACAGTGT
ATGACACATCACAGAGAAAGGTTGCAGCAAGTAGGACCAGGCAAAAAATATTTACTTTTCCAGCAACTGGTAAATCTATAAATATGAACAGCAGT
CCCCTCTATTATCCAGGAAAATTTCTCGAGCCCCCAAAAGACATGGCTTTCCAAGACTCAACCAACTTCTGTAGACAATTGTCTGGTCAACTTCA
TGCAGCATACGTAACCTCGCAATCAAGGAAAACAAAACTGTGTGCTACCATCCTCCTCCGTTTCAATGTTTTCTTGACGTTCTAGCAATGTAGTC
ATGCTTGAGAAGGTTTGCTCTCAAAAGCATTGATCTCACATCCCGATCGAATTCCTTGCCTGTCTGCAGCACCTTCTGGAAGGTTGCATTTCTCT
GATCAGGATGTCGTGCATACAAAATTTTGTTGTGTGAGTCAATTCGAGCCTGAATTTGGTTGTCAGTGATCAAAGATTCAAGTTCCTTTTCCAAC
CCGGCAACACTCGTCTTGAAAGCATTAACCATCATATTCAAATCAACCGAGACAAATGGGTGGGTATACTGTATCAAAGCTTTGCTACGGATTTG
ATCATACAGTGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399009] | SGN-U573718 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195771 [Download][View] | Facility Assigned ID: FA0AAD2BA04FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.965 | Expected Error Rate: 0.0034 | Quality Trim Threshold: 14.5 |
Working
