EST details — SGN-E399005
| Search information |
| Request: 399005 | Match: SGN-E399005 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172620 | Clone name: TUS-14-A2 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172620 is on microarray TOM1 spot ID 1-1-7.1.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10700 [cLEC-6-A11] | Trace: SGN-T24069 | EST: SGN-E202408 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T1258 | EST: SGN-E378335 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T195614 | EST: SGN-E394288 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T195614 | EST: SGN-E399004 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T195642 | EST: SGN-E394316 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T199448 | EST: SGN-E398122 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172620 [TUS-14-A2] | Trace: SGN-T199548 | EST: SGN-E398222 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E399005 | Length: 696 bp (854 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E399005 [] (trimmed)
AACTTGGTCTGGTGATTCAACGATTTATTTTCATCGAAAAGCTGATGATGGATGGTGGAGCATTTTCAAACTCGATTTACCAGACGATTTATCGA
ATTTGGTTGATGAGGGTAATGCTTCGATTCGAGTTACTCCGCCTGGTTTGCATTGCTTTACTCCTGCAGCAGCAGCAGTATCAGGAGACCACTCT
AAAACATCAATTATTGCTATTGCAACTCGAAGACCCGGAAAGAGCTATCGCCACATCGAAATTTTCGATGTGGAGACTCAGAAGTTCTTTCCGGT
GACGGAATTGATTAATCCTACAATTCATCATTACAATCCCTTCTTCTCTCCTGAATCGACTTACCTCGGTTATCACAGATACCGAGGCGAATCGT
GTTCAGGGGAAACAACGATTCCTTACTTGGACTCTGTAATTTCTCCGGTTAACGGACTGAAAATGCTGAGGCTTAACGGATTCTTCCCTGCATCC
TCTCCGTCTGGTGAATTCATTGCATTCAATCCAGGATTCAAAGGACTAGAAATCGTCAAATCGGATGGATCGAAAAAATGGACATTGATTAAAGA
TCGTACATCTTTCTGCAATTCATGGTCTCCAGCTGAACCTCATGTGATATATACATCAATCGGACCTATATTCGAATCAGTTAAAACAACTGTAC
AAATAGCACGCGTTTCGTTCAGCTCATTGAA
ATTTGGTTGATGAGGGTAATGCTTCGATTCGAGTTACTCCGCCTGGTTTGCATTGCTTTACTCCTGCAGCAGCAGCAGTATCAGGAGACCACTCT
AAAACATCAATTATTGCTATTGCAACTCGAAGACCCGGAAAGAGCTATCGCCACATCGAAATTTTCGATGTGGAGACTCAGAAGTTCTTTCCGGT
GACGGAATTGATTAATCCTACAATTCATCATTACAATCCCTTCTTCTCTCCTGAATCGACTTACCTCGGTTATCACAGATACCGAGGCGAATCGT
GTTCAGGGGAAACAACGATTCCTTACTTGGACTCTGTAATTTCTCCGGTTAACGGACTGAAAATGCTGAGGCTTAACGGATTCTTCCCTGCATCC
TCTCCGTCTGGTGAATTCATTGCATTCAATCCAGGATTCAAAGGACTAGAAATCGTCAAATCGGATGGATCGAAAAAATGGACATTGATTAAAGA
TCGTACATCTTTCTGCAATTCATGGTCTCCAGCTGAACCTCATGTGATATATACATCAATCGGACCTATATTCGAATCAGTTAAAACAACTGTAC
AAATAGCACGCGTTTCGTTCAGCTCATTGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E399005] | SGN-U584580 | Tomato 200607 | Build 2 | 30 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195642 [Download][View] | Facility Assigned ID: FA0AAD2BA01RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0024 | Quality Trim Threshold: 14.5 |
Working
