EST details — SGN-E398947
| Search information |
| Request: 398947 | Match: SGN-E398947 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172823 | Clone name: TUS-14-I13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172823 is on microarray TOM1 spot ID 1-1-4.1.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C11003 [cLEC-6-N8] | Trace: SGN-T24059 | EST: SGN-E202398 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172823 [TUS-14-I13] | Trace: SGN-T195126 | EST: SGN-E393800 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172823 [TUS-14-I13] | Trace: SGN-T195312 | EST: SGN-E393986 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172823 [TUS-14-I13] | Trace: SGN-T195312 | EST: SGN-E398946 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172823 [TUS-14-I13] | Trace: SGN-T195583 | EST: SGN-E394257 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398947 | Length: 518 bp (862 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398947 [] (trimmed)
CTAGGATGCATTATGTAAATGAAAATTGCTGGATTGTTCCGTGATGCTGCTGCGTAATTCTTTTTTTTTCACATTCCACCAACTGAATTCAGTTT
CTTGAGTGGTGCATAATTCTTCTTTTCTACTCCAGTTTGTATTATTTTGATGGGTTTGAAATTCTTTTTTCCGGGTATTCCCTATTTGTACATAC
ATGCCTCAATCTATTTCAATGTGTTTGTACATATTGACTATCAAGTTAATATTGCAGGGCATCATCAGTTTTTAGCATTCTTTTGCTGCTCCTCC
GTGATTCCTCCAATTTTAAGATTAGGATACAAGCAGCTGCAGCTTTGGCTGTTCCAGCAACCTTAAATGATTATGGCAGATCATTCTTTAGTGTC
CTTCAAGGTGTGCAGCATGTTGTCGAGAGTCTCAGTTCTGATGAGATATCGGGCGCGATCAAATTTGAAATATCGATTGGCGCTTGAAATGCAGC
TGACCTCAACTATGCTGCATTTGCTTGGCCTCACTTCCAAAAC
CTTGAGTGGTGCATAATTCTTCTTTTCTACTCCAGTTTGTATTATTTTGATGGGTTTGAAATTCTTTTTTCCGGGTATTCCCTATTTGTACATAC
ATGCCTCAATCTATTTCAATGTGTTTGTACATATTGACTATCAAGTTAATATTGCAGGGCATCATCAGTTTTTAGCATTCTTTTGCTGCTCCTCC
GTGATTCCTCCAATTTTAAGATTAGGATACAAGCAGCTGCAGCTTTGGCTGTTCCAGCAACCTTAAATGATTATGGCAGATCATTCTTTAGTGTC
CTTCAAGGTGTGCAGCATGTTGTCGAGAGTCTCAGTTCTGATGAGATATCGGGCGCGATCAAATTTGAAATATCGATTGGCGCTTGAAATGCAGC
TGACCTCAACTATGCTGCATTTGCTTGGCCTCACTTCCAAAAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398947] | SGN-U564576 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200180 [Download][View] | Facility Assigned ID: FA0AAD2AE07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.952 | Expected Error Rate: 0.0086 | Quality Trim Threshold: 14.5 |
Working
