EST details — SGN-E398923
| Search information |
| Request: 398923 | Match: SGN-E398923 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172725 | Clone name: TUS-14-E11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172725 is on microarray TOM1 spot ID 1-1-6.1.20.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10857 [cLEC-6-H2] | Trace: SGN-T24038 | EST: SGN-E202377 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172725 [TUS-14-E11] | Trace: SGN-T195113 | EST: SGN-E393787 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172725 [TUS-14-E11] | Trace: SGN-T195566 | EST: SGN-E394240 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172725 [TUS-14-E11] | Trace: SGN-T195566 | EST: SGN-E398922 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172725 [TUS-14-E11] | Trace: SGN-T195567 | EST: SGN-E394241 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398923 | Length: 516 bp (871 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398923 [] (trimmed)
GGATGCCTTCACTGACACAGCATTCAAAGGGAACCCAGCTGCTGTTTGCTTATTGGAAGAAGAGAAAGATGATAAATGGTTACAATCTGTTGCTG
CTGAGTTTAATCTCTCTGAAACTTGTTATCTCATTCCGCTCATTGAACCTGCTAACACAAACCCCAGATTTGGCCTTCGTTGGTTCACTCCTGTT
GACGAGGTCGATTTATGTGGGCATGCAACACTAGCAGCAGCACACTTTCTATTTTCGTATGGCCTGGTTAAAACTGATACTATTGAGTTTTCAAC
AAGATCAGGAATTTTAATTGCCAAAAAGTACCAGAACCAAAAGTTTCAAATTCTCAGGACGATTGGCCAACTGGTTACTCAATTGAATTGGATTT
TCCTGTTGTCCAAGTAGCCGAGACCAATTTTAATGATGTTCTTGCAATTTCAAAGAGCTTGAATGGCGCATCTGTGGTTGAGATCTATGAGACAT
CAATGGGTGATCATTTTATTTTGCTCCCATCAGGGGAGGAA
CTGAGTTTAATCTCTCTGAAACTTGTTATCTCATTCCGCTCATTGAACCTGCTAACACAAACCCCAGATTTGGCCTTCGTTGGTTCACTCCTGTT
GACGAGGTCGATTTATGTGGGCATGCAACACTAGCAGCAGCACACTTTCTATTTTCGTATGGCCTGGTTAAAACTGATACTATTGAGTTTTCAAC
AAGATCAGGAATTTTAATTGCCAAAAAGTACCAGAACCAAAAGTTTCAAATTCTCAGGACGATTGGCCAACTGGTTACTCAATTGAATTGGATTT
TCCTGTTGTCCAAGTAGCCGAGACCAATTTTAATGATGTTCTTGCAATTTCAAAGAGCTTGAATGGCGCATCTGTGGTTGAGATCTATGAGACAT
CAATGGGTGATCATTTTATTTTGCTCCCATCAGGGGAGGAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398923] | SGN-U578696 | Tomato 200607 | Build 2 | 189 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200173 [Download][View] | Facility Assigned ID: FA0AAD2AC06RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0004 | Quality Trim Threshold: 14.5 |
Working
