EST details — SGN-E398878
| Search information |
| Request: 398878 | Match: SGN-E398878 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183311 | Clone name: TUS-41-N13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183311 is on microarray TOM1 spot ID 1-1-4.2.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C31210 [cLEG-12-J1] | Trace: SGN-T66100 | EST: SGN-E252290 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183311 [TUS-41-N13] | Trace: SGN-T195193 | EST: SGN-E393867 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183311 [TUS-41-N13] | Trace: SGN-T195637 | EST: SGN-E394311 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183311 [TUS-41-N13] | Trace: SGN-T195823 | EST: SGN-E394497 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183311 [TUS-41-N13] | Trace: SGN-T200438 | EST: SGN-E399512 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398878 | Length: 619 bp (865 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398878 [] (trimmed)
CCTCAAATTTATTTTTAACATATATTATAATGTTTTTACAACAATCCATCTATATTGTGGCATGTCTTTGAAAGCAAGTACCCATAGACAATATA
TTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAATTATATACCTAGT
TAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAAATGACAAAGCATCCATTGTGGCATCACAGTATTATTAGCTGCACCTTGCTGCTG
TGAAGAACTACCTCCTTCCACTTCCCCATTATCAATTACATTAGTACTCTGGTATGCTTCCCCAAGGAGAGGAGAGTCCAGTTGTTGTGGCAAAA
CAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTGTTTTGCTCCTGC
AATGCTCTGTCCTTTTTTTGAAGCACAAAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAAAGTTGAATCAAGCTGGTG
CTCCAAAATCTAAAGTTCCTTCCTACTTAAGGACTCCAAATCTTCCCCC
TTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAATTATATACCTAGT
TAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAAATGACAAAGCATCCATTGTGGCATCACAGTATTATTAGCTGCACCTTGCTGCTG
TGAAGAACTACCTCCTTCCACTTCCCCATTATCAATTACATTAGTACTCTGGTATGCTTCCCCAAGGAGAGGAGAGTCCAGTTGTTGTGGCAAAA
CAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTGTTTTGCTCCTGC
AATGCTCTGTCCTTTTTTTGAAGCACAAAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAAAGTTGAATCAAGCTGGTG
CTCCAAAATCTAAAGTTCCTTCCTACTTAAGGACTCCAAATCTTCCCCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398878] | SGN-U578128 | Tomato 200607 | Build 2 | 67 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195823 [Download][View] | Facility Assigned ID: FA0AAD29CG07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.939 | Expected Error Rate: 0.0114 | Quality Trim Threshold: 14.5 |
Working
