EST details — SGN-E398874
| Search information |
| Request: 398874 | Match: SGN-E398874 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183307 | Clone name: TUS-41-N9 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183307 is on microarray TOM1 spot ID 1-1-8.2.3.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C69075 [cLEN-8-O12] | Trace: SGN-T88856 | EST: SGN-E274160 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199447 | EST: SGN-E398121 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199547 | EST: SGN-E398221 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T199593 | EST: SGN-E398267 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183307 [TUS-41-N9] | Trace: SGN-T200159 | EST: SGN-E398875 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398874 | Length: 644 bp (865 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398874 [] (trimmed)
GAGATGGTTAATCAATCTGCATTATGCCCTTTGTCAAGTTGTCCACATACATACATATAATACATAGTAGAATTAAGCAGTGACAATTATATTCC
AATGTAATATTTTTTCCAAAAGAAGGCAAATATATATATATATGCCACTGATTGTTATCATCCAAAAATTATTATTAGTACAATCTTCAACAAAA
GCTTCCTCCTTTGAGTTTGTTAGCTGAATGGTAGCCCTAACTTTAAAGATGTAATTGAGCAATCATCTTCAACTGCAGTAGTACCACCTAACTTC
AAAGATGCATTTGATGAATCATCTTGATCAGGATTATTAGTTGTAATTATAGACTCAGATGATTGGCCCTCTTCCATCACCATGTCAGTCACTAA
AGGCAATTTCCCTTTTTTCATAATTTCCATTTTGTGTTTCAATTGTTTGTTTTCTTCCATCAGCTCAGCACCCTTTCTTTGAAGGTTGGTAATTT
CATCCATTATTCGTTTACCCTTAATCTCAAGCACACGGTTGAAACCAGCTTCAAAGTCTTTTCTCAATTTGTTGTAATTCTTCTAAACTCAATCC
TTCAAGTTTCCTCACCTCTCATCTGCCTGAACCTCCGAATTTTATCAGCTACCTGCTTGCTTAATCCCAAGTTG
AATGTAATATTTTTTCCAAAAGAAGGCAAATATATATATATATGCCACTGATTGTTATCATCCAAAAATTATTATTAGTACAATCTTCAACAAAA
GCTTCCTCCTTTGAGTTTGTTAGCTGAATGGTAGCCCTAACTTTAAAGATGTAATTGAGCAATCATCTTCAACTGCAGTAGTACCACCTAACTTC
AAAGATGCATTTGATGAATCATCTTGATCAGGATTATTAGTTGTAATTATAGACTCAGATGATTGGCCCTCTTCCATCACCATGTCAGTCACTAA
AGGCAATTTCCCTTTTTTCATAATTTCCATTTTGTGTTTCAATTGTTTGTTTTCTTCCATCAGCTCAGCACCCTTTCTTTGAAGGTTGGTAATTT
CATCCATTATTCGTTTACCCTTAATCTCAAGCACACGGTTGAAACCAGCTTCAAAGTCTTTTCTCAATTTGTTGTAATTCTTCTAAACTCAATCC
TTCAAGTTTCCTCACCTCTCATCTGCCTGAACCTCCGAATTTTATCAGCTACCTGCTTGCTTAATCCCAAGTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398874] | SGN-U577229 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199547 [Download][View] | Facility Assigned ID: FA0AAD29CG05FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.926 | Expected Error Rate: 0.0054 | Quality Trim Threshold: 14.5 |
Working
