EST details — SGN-E398860
| Search information |
| Request: 398860 | Match: SGN-E398860 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183129 | Clone name: TUS-41-F23 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183129 is on microarray TOM1 spot ID 1-1-2.2.3.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183129 [TUS-41-F23] | Trace: SGN-T195625 | EST: SGN-E394299 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183129 [TUS-41-F23] | Trace: SGN-T195626 | EST: SGN-E394300 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183129 [TUS-41-F23] | Trace: SGN-T199445 | EST: SGN-E398119 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183129 [TUS-41-F23] | Trace: SGN-T200435 | EST: SGN-E399509 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398860 | Length: 639 bp (828 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398860 [] (trimmed)
CGGGCCCCCCCCTTTTTTTCCGCAATCAATTTCTCCAATGAAACATTTGTAAACTTGTTTAGGTAACAACATAAATAAACAAATTTTTCAGATCA
ACCCCCACACACCAATTTGATCTGAAATAAAAAATTGATTTTCAGGTCAAATGATAATGGCACTTGGTGGTAAAAAAAAAAAAAGATGGTAACTT
TCAAGAAAAAAGAAAATACAAGCACACAAAAAATAAATCTAAACACTTTCTTGACACTTGGTTTAACTAATTATCTGAAGCATCCAGCATGTATG
GTTCACTTAACCATCCTACCAGAGCAGAAGAAATGCATCCCACACAGCAGCGGTTGCGAAAAGAGCTGGTATCATTATCTGTGCTTTAAATGAGT
TGAGCAAATTTGTTGAACTGCTGCGTACTGGAGCAGCTTTTGGAGGTGGAGGTGCCTTTTCAACATGAATAGCCACTTTCATGCCTCCATAACAG
TATCCTTTTCCACTAGCGAAATAGTAGGTTTTAGTCACATTAAGCGGAACAACGTCCCTTCCTGCTCCAGTAGTCCAATTGTGAAGAGGATGATC
ACTATTGCACCTCTCGTAATCTGTCTTGTTTACCTCAAGCACATTCATCTGGTTTCCTGTCTTACACAA
ACCCCCACACACCAATTTGATCTGAAATAAAAAATTGATTTTCAGGTCAAATGATAATGGCACTTGGTGGTAAAAAAAAAAAAAGATGGTAACTT
TCAAGAAAAAAGAAAATACAAGCACACAAAAAATAAATCTAAACACTTTCTTGACACTTGGTTTAACTAATTATCTGAAGCATCCAGCATGTATG
GTTCACTTAACCATCCTACCAGAGCAGAAGAAATGCATCCCACACAGCAGCGGTTGCGAAAAGAGCTGGTATCATTATCTGTGCTTTAAATGAGT
TGAGCAAATTTGTTGAACTGCTGCGTACTGGAGCAGCTTTTGGAGGTGGAGGTGCCTTTTCAACATGAATAGCCACTTTCATGCCTCCATAACAG
TATCCTTTTCCACTAGCGAAATAGTAGGTTTTAGTCACATTAAGCGGAACAACGTCCCTTCCTGCTCCAGTAGTCCAATTGTGAAGAGGATGATC
ACTATTGCACCTCTCGTAATCTGTCTTGTTTACCTCAAGCACATTCATCTGGTTTCCTGTCTTACACAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398860] | SGN-U586153 | Tomato 200607 | Build 2 | 29 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195625 [Download][View] | Facility Assigned ID: FA0AAD29CC12FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.959 | Expected Error Rate: 0.0083 | Quality Trim Threshold: 14.5 |
Working
