EST details — SGN-E398827

Search information 
Request: 398827Match: SGN-E398827
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C182522Clone name: TUS-39-M16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182522 is on microarray TOM1 spot ID 1-1-1.1.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C45907 [cLEG-9-L5] Trace: SGN-T65549 EST: SGN-E251466 Direction: 5' Facility: TIGR
Clone: SGN-C182522 [TUS-39-M16] Trace: SGN-T194904 EST: SGN-E393578 Direction: 3' Facility: INRA
Clone: SGN-C182522 [TUS-39-M16] Trace: SGN-T195267 EST: SGN-E393941 Direction: 3' Facility: INRA
Clone: SGN-C182522 [TUS-39-M16] Trace: SGN-T195268 EST: SGN-E393942 Direction: 5' Facility: INRA
Clone: SGN-C182522 [TUS-39-M16] Trace: SGN-T200134 EST: SGN-E398828 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398827Length: 475 bp (878 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398827 [] (trimmed) AGGAAGAAAAGTTTTTTTAACTTAAGCCAATTTTACCTCCCCAACCGGAAAGTTTATTAATATTGTTTGGAACAAAACCTATACCATTAATTAAT
TAAACCCCCCCGAAAATTATTTCCTCCCTCCTTGCCGAACGGGGGGAACCTCCCTGGGGGTATCAATGAAGAATTATTATTATTGTTATTTTAAC
CCCGAAAAGGATGAACCCGACCCCATCCCTCCCCGTTCCTTCCCCCCAAAGCCCCCCCCATTGTAAGGGTAAGAAATTGGGGGGGAAAAAGGGAT
GGAAACCCATGAACTGTTGCCGAATTTTGGCCCGAAGAATTGGGGTGGGCCCCCCCATTTTCCTTTAACCTCCTAATAAACCAATTGTTTTGTTC
CTGGAACCCCTTCCCCCTTTTCTGCCCCCCAAAAATGGACCCCGGCCCCCATTGAATCCTCCCGCTTCCAAATCCCCTTAAAGAAAAAAGCAACC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398827] SGN-U583380 Tomato 200607 Build 2 3 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194904 [Download][View] Facility Assigned ID: FA0AAD27BG08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.878 Expected Error Rate: 0.0249 Quality Trim Threshold: 14.5