EST details — SGN-E398825
| Search information |
| Request: 398825 | Match: SGN-E398825 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182520 | Clone name: TUS-39-M14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182520 is on microarray TOM1 spot ID 1-1-3.1.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C182520 [TUS-39-M14] | Trace: SGN-T194901 | EST: SGN-E393575 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182520 [TUS-39-M14] | Trace: SGN-T194902 | EST: SGN-E393576 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182520 [TUS-39-M14] | Trace: SGN-T194903 | EST: SGN-E393577 | Direction: 5' | Facility: INRA |
| Clone: SGN-C182520 [TUS-39-M14] | Trace: SGN-T200133 | EST: SGN-E398826 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398825 | Length: 625 bp (877 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398825 [] (trimmed)
CATCAAAATTTATTTTTAACATATATTATAATGTTTTTACAACAATCCATCTATATTGTGGCATGTCTTTGAAAGCAAGTACACATAGACAATAT
ATTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAATTATATACCTAG
TTAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAAATGACGAAGCATCCATTGTGGCATCACAGTATTATTAGCTGCACCTTGCTGCT
GTGAAGAACTACCTCCTTCCACTTCCCCATTATCTATTACATTAGTACTCTGGTATGCTTCCCCAAGGTGAGGAGAGTCCAGTTGTTGTGGCAAA
ACAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTGTTTTGCTCCTG
CAATGCTCTGTCCTTTTTTTGAAGCACAGAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAAAGCTGAATCAAGCTGGT
GCTCCAAAATCTGAAGTTCCTTCATACCTAAGGACTCCAAATCTTCTCCCACATA
ATTGTGGCATCAAAATTATATACCTAGTTAATTATATTGAAGTATTAATGATACCTTTTAATTAATATATTGTGGCATCAAAATTATATACCTAG
TTAATTATATTGAAGTATTAATGATACCTTTTAATTATTAAAATGACGAAGCATCCATTGTGGCATCACAGTATTATTAGCTGCACCTTGCTGCT
GTGAAGAACTACCTCCTTCCACTTCCCCATTATCTATTACATTAGTACTCTGGTATGCTTCCCCAAGGTGAGGAGAGTCCAGTTGTTGTGGCAAA
ACAAATGAAGATGAGTTGATTTCCCACTGATTTTGCTGTGCCACCTCTTTCTCCCTCTCCTTCACCTTCTTCGAAAGCTGGTTGTTTTGCTCCTG
CAATGCTCTGTCCTTTTTTTGAAGCACAGAAATGGACTCATGCATCAATTGATTCTTTCTTGATCGAATGTGTTTAAAAGCTGAATCAAGCTGGT
GCTCCAAAATCTGAAGTTCCTTCATACCTAAGGACTCCAAATCTTCTCCCACATA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398825] | SGN-U578128 | Tomato 200607 | Build 2 | 67 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T194901 [Download][View] | Facility Assigned ID: FA0AAD27BG07FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.939 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
