EST details — SGN-E398823
| Search information |
| Request: 398823 | Match: SGN-E398823 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C182516 | Clone name: TUS-39-M10 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182516 is on microarray TOM1 spot ID 1-1-7.1.8.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C18347 [cLED-23-A10] | Trace: SGN-T54407 | EST: SGN-E239442 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182516 [TUS-39-M10] | Trace: SGN-T194895 | EST: SGN-E393569 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182516 [TUS-39-M10] | Trace: SGN-T194895 | EST: SGN-E398822 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182516 [TUS-39-M10] | Trace: SGN-T194896 | EST: SGN-E393570 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182516 [TUS-39-M10] | Trace: SGN-T194897 | EST: SGN-E393571 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398823 | Length: 715 bp (874 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398823 [] (trimmed)
GGTGAATATTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCT
AAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTAGCTT
CTTCGACCTGTTAAGGATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAG
GGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCC
AGCACCAGCATGAAGGATATTCTTGGAAAGTATAAATTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAGCTAGAGAA
TAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTGAGCTCAGGCAGATGAGAGGTGAGGAACTTGAAGGATTGAGTTTAGAAG
AATTACAACAAATTGAGAAAAGACTTGAAGCTGGTTTCAACCGTGTGCTTGAGATTAAGGGTAAACGAATAATGGATGAAATTACCAACCTTCAA
AGAAAGGGTGCTGAGCTGATGGAAGAAACAAACAATTGAAACACAAAATG
AAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTAGCTT
CTTCGACCTGTTAAGGATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAG
GGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCC
AGCACCAGCATGAAGGATATTCTTGGAAAGTATAAATTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAGCTAGAGAA
TAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTGAGCTCAGGCAGATGAGAGGTGAGGAACTTGAAGGATTGAGTTTAGAAG
AATTACAACAAATTGAGAAAAGACTTGAAGCTGGTTTCAACCGTGTGCTTGAGATTAAGGGTAAACGAATAATGGATGAAATTACCAACCTTCAA
AGAAAGGGTGCTGAGCTGATGGAAGAAACAAACAATTGAAACACAAAATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398823] | SGN-U577229 | Tomato 200607 | Build 2 | 15 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T200132 [Download][View] | Facility Assigned ID: FA0AAD27BG05RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.936 | Expected Error Rate: 0.0067 | Quality Trim Threshold: 14.5 |
Working
