EST details — SGN-E398715

Search information 
Request: 398715Match: SGN-E398715
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184653Clone name: TUS-45-F11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184653 is on microarray TOM1 spot ID 1-1-6.2.14.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C184653 [TUS-45-F11] Trace: SGN-T198679 EST: SGN-E397353 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398715Length: 615 bp (879 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398715 [] (trimmed) CTCAAAATGGATATATTGCAAGTCCCAATGGAAGCCCACTTGTTAAATTTGTTCAGCACACTGAATCAACCATTGAAAGGGCAATATTCGACTTC
CGTTTTCTGGCACTCCTTGCTGTTGGAGGTTCGTTAGCTGGCTCTTTGCTCTGCTTCCTAAATGGTTGTGTCTACATTGTTGATGCGTACAAGGT
TTATTGGACGAGCTGTGTCAAAGGAATTCACACAGGACAAATGGTTCTACGATTGGTTGAAGCTATAGATGTTTATCTTGCTGGGACTGTGATGT
TAATATTTGGGATGGGATTGTATGGATTGTTCATAACTAATGTCTCTCCTGATGTGCATCCAACCGCCGACCGTGCCCTCAAGCAGTCTTCCTTG
TTTGGGATGTTTGCTCTGAAGGAGAGGCCAAAATGGATGAAGATCAGTTCTCTGGATGAACTGAAAACCAAAGTAGGACATGTCATTGTCATGAT
CCTTCTTGTCAAGATGTTCGAGAGGAGTAAGATGGTGACTATAGCCACTGGTACTGATCTGTTGAGCTACTCAGTGTGTATTTTCTTGTCTTCTG
CTTCCTTGTATATTCGTCATAATCTGCAAAAGTCAAACTAACTGT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398715] SGN-U580855 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T200041 [Download][View] Facility Assigned ID: FA0AAD33CC06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0155 Quality Trim Threshold: 12.5