Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E398347

Search information 
Request: 398347Match: SGN-E398347
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183570Clone name: TUS-42-I8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183570 is on microarray TOM1 spot ID 1-1-1.1.2.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C183570 [TUS-42-I8] Trace: SGN-T200303 EST: SGN-E399272 Direction: 3' Facility: INRA
Clone: SGN-C183570 [TUS-42-I8] Trace: SGN-T200304 EST: SGN-E399273 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398347Length: 260 bp (864 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E398347 [] (trimmed) AAAAAAAAATGATTTGTTCTTATCATTGACATAAAACGAAATTATAAGGGACCCATTTGGGAACTTAAAACCCCATCAATTCATTGCCCCTAACA
AAACAAAATTGTGTAATAAAAAAGTAAATGAAAATAAAACACTGAAACAAAGCTAAACACAGTGATATATGTCTGAAAGCAATCCCCTATAAATA
TGCTTAACATAAATAAAAAAAAATCCCATTGCACCATATGAAAAAATCCTCTACCCAAACTAGCCTCAAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398347] SGN-U581488 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199673 [Download][View] Facility Assigned ID: FA0AAD30BE04FM2
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.869 Expected Error Rate: 0.0157 Quality Trim Threshold: 14.5