EST details — SGN-E398272
| Search information |
| Request: 398272 | Match: SGN-E398272 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172728 | Clone name: TUS-14-E14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172728 is on microarray TOM1 spot ID 1-1-3.1.20.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C10861 [cLEC-6-H3] | Trace: SGN-T24171 | EST: SGN-E202510 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T195223 | EST: SGN-E393897 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T195782 | EST: SGN-E394456 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T195782 | EST: SGN-E399044 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T199551 | EST: SGN-E398225 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172728 [TUS-14-E14] | Trace: SGN-T199598 | EST: SGN-E399045 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398272 | Length: 571 bp (874 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398272 [] (trimmed)
GAAGAAATCATTGATTAGATTCGTTGTGTAGATTTTGGTTATCTGCAGTTTTTGTTTTTCATTTTAAATTTGTGAATCGAGAGTGTATACGAATT
TATTCAAGGAAAACACTTTTAGGAGCTTTTGTTGATCCTTCAATGGCCGCACCACCGGCGAGGGCTAGAGCAGACTATGATTATCTCATTAAGCT
TCTTTTGATCGGCGATAGTGGTGTTGGTAAGAGTTGTCTTCTTTTACGTTTCTCTGATGGTTCCTTCACCACAAGCTTCATCACAACTATCGGAA
TTGATTTTAAAATTCGAACCATTGAGCTTGATGGAAAAAGAATCAAGCTTCAGATATGGGATACAGCTGGTCAGGAACGTTTTCGGACCATCACT
ACTGCTTACTATCGTGGAGCCATGGGTATACTGTTGGTGTATGATGTAACTGATGAATCCTCCTTTAACAACATCAGGAACTGGATTCGTAACAT
TGAGCAGCATGCCTCAGACAATGTTAACAAAATACTTGTAGGGAACAAGGCCGACATGGATGAAAGCAAGAGGGCTGTCCCCTACAGCAAAGGGG
T
TATTCAAGGAAAACACTTTTAGGAGCTTTTGTTGATCCTTCAATGGCCGCACCACCGGCGAGGGCTAGAGCAGACTATGATTATCTCATTAAGCT
TCTTTTGATCGGCGATAGTGGTGTTGGTAAGAGTTGTCTTCTTTTACGTTTCTCTGATGGTTCCTTCACCACAAGCTTCATCACAACTATCGGAA
TTGATTTTAAAATTCGAACCATTGAGCTTGATGGAAAAAGAATCAAGCTTCAGATATGGGATACAGCTGGTCAGGAACGTTTTCGGACCATCACT
ACTGCTTACTATCGTGGAGCCATGGGTATACTGTTGGTGTATGATGTAACTGATGAATCCTCCTTTAACAACATCAGGAACTGGATTCGTAACAT
TGAGCAGCATGCCTCAGACAATGTTAACAAAATACTTGTAGGGAACAAGGCCGACATGGATGAAAGCAAGAGGGCTGTCCCCTACAGCAAAGGGG
T
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398272] | SGN-U578498 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199598 [Download][View] | Facility Assigned ID: FA0AAD2BC07RM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 1.0000 | Quality Trim Threshold: 14.5 |
Working
