EST details — SGN-E398220
| Search information |
| Request: 398220 | Match: SGN-E398220 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C183203 | Clone name: TUS-41-J1 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183203 is on microarray TOM1 spot ID 1-1-8.2.3.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C5862 [cLEC-33-G12] | Trace: SGN-T30120 | EST: SGN-E206848 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183203 [TUS-41-J1] | Trace: SGN-T195182 | EST: SGN-E393856 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183203 [TUS-41-J1] | Trace: SGN-T195629 | EST: SGN-E394303 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183203 [TUS-41-J1] | Trace: SGN-T195629 | EST: SGN-E398866 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183203 [TUS-41-J1] | Trace: SGN-T199592 | EST: SGN-E398266 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183203 [TUS-41-J1] | Trace: SGN-T199592 | EST: SGN-E398865 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398220 | Length: 635 bp (826 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E398220 [] (trimmed)
CTTTGGAAGTTGTGTGAGTTTTCAGAAAGCCTTTGAAGTTCGCCGGAAAATAGCAATATTTTCAATTCAAGCCAATCAGATGGGAAGAGGAAAGA
TAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTT
CTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAACATTAAGGCAACTATTGAACGATA
CAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGA
TACAAATGATGCAGAATTCAAACAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAA
CGAGGCATCAGCAGAATCAGATCAAAAAAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGAAATTCTACTGGAACAGGAGAA
TGCATTCCTTAGATCAAAGATAGCAAAAAATGAGAGGCTTCAGGGAACTAGCATGATGCCCGCAG
TAGAGATAAAGAGGATAGAGAACAACACAAACAGGCAGGTTACATTTTGCAAGAGAAGAAATGGATTGTTGAAGAAAGCCTATGAACTCTCTGTT
CTATGTGAAGCTGAGATTGCTCTTATTGTTTTCTCCACACGTGGACGCGTCTATGAATACTCTAACAACAACATTAAGGCAACTATTGAACGATA
CAAGAAGGCAACTGCTGAAACCTCTAATGCTTGCACCACTCAAGAGCTCAATGCTCAGTTTTATCAACAAGAATCAAAAAAGCTGCGCCAACAGA
TACAAATGATGCAGAATTCAAACAGGCATCTGGTTGGTGAAGGATTAAGTTGTTTGAACGTAAGAGAGCTGAAGCAGTTGGAAAATAGACTTGAA
CGAGGCATCAGCAGAATCAGATCAAAAAAGCATGAGATGATACTGGCTGAAACTGAGAATTTGCAGAAGAGGGAAATTCTACTGGAACAGGAGAA
TGCATTCCTTAGATCAAAGATAGCAAAAAATGAGAGGCTTCAGGGAACTAGCATGATGCCCGCAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398220] | SGN-U585391 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199546 [Download][View] | Facility Assigned ID: FA0AAD29CE01RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.945 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
