EST details — SGN-E398129
| Search information |
| Request: 398129 | Match: SGN-E398129 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C172822 | Clone name: TUS-14-I12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172822 is on microarray TOM1 spot ID 1-1-5.1.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C11002 [cLEC-6-N7] | Trace: SGN-T24191 | EST: SGN-E202530 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172822 [TUS-14-I12] | Trace: SGN-T195387 | EST: SGN-E394061 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172822 [TUS-14-I12] | Trace: SGN-T195387 | EST: SGN-E399066 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172822 [TUS-14-I12] | Trace: SGN-T195388 | EST: SGN-E394062 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172822 [TUS-14-I12] | Trace: SGN-T195681 | EST: SGN-E394355 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172822 [TUS-14-I12] | Trace: SGN-T195681 | EST: SGN-E399067 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398129 | Length: 666 bp (865 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398129 [] (trimmed)
GAACAATGCTTATCGCAGCATATGACATTTCAAATAACGACGTACACAATATCAGGACAACCTGTACTAGTATTACATTTGAGCATTTCAGAATA
ACCAGCGTTCTTTCGCTCATCAATTCCATTTACATCCTTTTCCATCTCTGCAGAGCATGGCAAAAGTGATTTCATACTAAATATTTCAATACCTA
GCTTATGGCAGTTAGTGCCTTCATCTAAACCTCGTCTTACAGGCTTTTATTAAACCAAGAAACAAGAGCGTTGAACTCACCCAAGAAGTAAAAAC
AACTGCATCCATTAACAAAGGTATCAACTCTTGATAGTAAGTTCAGCCCTGAGATGGAGCATACCATTAGTAAAATATGGACTGTCCTCAGCGAT
GAAAGAAGTCCATGGTATGGCAAATAGATTGCGGTATCCAACTGCCTTGCCCCCTGTAAAAGTGTAGTTACCTTTGTACTTGCTGACATACTCCT
CCCCTGGTTTTGTTCTTGCTGCAAATTCATAATCAACAGCAAAAGTAACCGAACCTTTTTCCTGCATCCCCAGAAAGAGACCAAAACAGTGGAAA
GAGCTTTGCTGATCCATGTTGCAATGTGCAGACAGGAAAAAACCTTGCCCTCCTAAATGAAATGCTTGAGAATACACTCTTCCTGAAAGAAAAAG
G
ACCAGCGTTCTTTCGCTCATCAATTCCATTTACATCCTTTTCCATCTCTGCAGAGCATGGCAAAAGTGATTTCATACTAAATATTTCAATACCTA
GCTTATGGCAGTTAGTGCCTTCATCTAAACCTCGTCTTACAGGCTTTTATTAAACCAAGAAACAAGAGCGTTGAACTCACCCAAGAAGTAAAAAC
AACTGCATCCATTAACAAAGGTATCAACTCTTGATAGTAAGTTCAGCCCTGAGATGGAGCATACCATTAGTAAAATATGGACTGTCCTCAGCGAT
GAAAGAAGTCCATGGTATGGCAAATAGATTGCGGTATCCAACTGCCTTGCCCCCTGTAAAAGTGTAGTTACCTTTGTACTTGCTGACATACTCCT
CCCCTGGTTTTGTTCTTGCTGCAAATTCATAATCAACAGCAAAAGTAACCGAACCTTTTTCCTGCATCCCCAGAAAGAGACCAAAACAGTGGAAA
GAGCTTTGCTGATCCATGTTGCAATGTGCAGACAGGAAAAAACCTTGCCCTCCTAAATGAAATGCTTGAGAATACACTCTTCCTGAAAGAAAAAG
G
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398129] | SGN-U571708 | Tomato 200607 | Build 2 | 39 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199455 [Download][View] | Facility Assigned ID: FA0AAD2BE06FM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.963 | Expected Error Rate: 0.0028 | Quality Trim Threshold: 14.5 |
Working
