EST details — SGN-E398054
| Search information |
| Request: 398054 | Match: SGN-E398054 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C181894 | Clone name: TUS-38-C12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C181894 is on microarray TOM1 spot ID 1-1-5.3.10.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C6530 [cLEC-35-L2] | Trace: SGN-T30739 | EST: SGN-E210391 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C181894 [TUS-38-C12] | Trace: SGN-T194568 | EST: SGN-E393242 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E398054 | Length: 178 bp (949 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E398054 [] (trimmed)
AAATGATGACATTCATGATCAAAAGATCATATGAAATTTTCTTTTCCTTTTTGTTTCTTTTATTCTTATTAAAATCATCAAATAAAGACGACTTT
TATACCTAATAATACAATCATCATACCAAACAGAGCCGTATATGTAGTTGTTACTCATGGGGGGGAGGGGGGGGAGAGCAAAG
TATACCTAATAATACAATCATCATACCAAACAGAGCCGTATATGTAGTTGTTACTCATGGGGGGGAGGGGGGGGAGAGCAAAG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E398054] | SGN-U567805 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T199380 [Download][View] | Facility Assigned ID: FA0AAD26BB06FM1 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.897 | Expected Error Rate: 0.0222 | Quality Trim Threshold: 14.5 |
Working
