EST details — SGN-E397724

Search information 
Request: 397724Match: SGN-E397724
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C185177Clone name: TUS-46-L7
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C185177 is on microarray TOM1 spot ID 1-1-2.4.12.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70936 [cLER-16-F8] Trace: SGN-T95738 EST: SGN-E284465 Direction: 5' Facility: TIGR
Clone: SGN-C185177 [TUS-46-L7] Trace: SGN-T1879 EST: SGN-E378329 Direction: 5' Facility: Giov. Lab
Clone: SGN-C185177 [TUS-46-L7] Trace: SGN-T199051 EST: SGN-E397725 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397724Length: 634 bp (872 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397724 [] (trimmed) GTAGAGACATAAATATATTTATATCATCATCATCATTCATCATGCAGATCTTACTCTTAACAACATGTATATACATATACATATTATATAGCAGC
TTTGATATGCATTTTTTTGGTGTGTGTGTGGGTAACGTACTGATTAACCACATCACGTTTGATTCATGATCCATACATGGCGTCTACTAAAAATT
TCCACTACCTAAACGGCGGCGACAGTCTCGCTTGTGGCGGAAACGTCAGATCCCTTCCCGCCGGCTACGGCGGCAGCGACGGAGTTCTTCATGTA
GTCCTTTCTAGATGCAACCAACGAACACTTGTCCTTCTTCTCATCTAGATTCATCTGCTGCTGTCTACACTCTAGACTGCAAAAAGCACTATCTC
CTCTGTACATGTAGATATCCCGGCCAGGGATTAACCGGCGTTTACAGAGGAAGCAAGCTTTCAAAAAATTAGCAGTTTCTAGAAAATCAGCAGAT
TTACGGCGGTTTCTGACGGAAACGGTTTTCGCTGCTGTCAATAAACGTTGTTGATCTAGGTGTTGCTGCTGGGTGTTTGCAGGTGAAAAAGGATT
GTGAGGATCGAATGGATTATTGTAATTACTAAGAGAAAAATTAGGGTCAGGATTATTGAAATTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397724] SGN-U580528 Tomato 200607 Build 2 56 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199050 [Download][View] Facility Assigned ID: FA0AAD34CF04FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0120 Quality Trim Threshold: 12.5