EST details — SGN-E397428
Search information |
Request: 397428 | Match: SGN-E397428 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C184891 | Clone name: TUS-45-P9 |
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Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C184891 is on microarray TOM1 spot ID 1-1-8.4.14.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C103075 [cLHT-35-L13] | Trace: SGN-T172068 | EST: SGN-E358422 | Direction: 5' | Facility: TIGR |
Clone: SGN-C184891 [TUS-45-P9] | Trace: SGN-T200053 | EST: SGN-E398727 | Direction: 3' | Facility: INRA |
Sequence |
Sequence Id: SGN-E397428 | Length: 199 bp (880 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E397428 [] (trimmed)
GCAAAATATGAAGTCCTTTCCAAGAGTATCCTCCTCTCGCCGGAAGAGCAGGAAGGCTCATTTCACGGCGCCTTCAAGTGCGCGCCGGATTTTAA
TGAGCGCACCCTTATCGTCCGAGTTACGTGTAAAGTACAACGTAAGATCTATGCCGGTGAGGAAAGATGACGAAGTTCACGTTGTAATGAGTTAT
TTACTAGGG
TGAGCGCACCCTTATCGTCCGAGTTACGTGTAAAGTACAACGTAAGATCTATGCCGGTGAGGAAAGATGACGAAGTTCACGTTGTAATGAGTTAT
TTACTAGGG
Unigenes |
Current Unigene builds | |||||
[SGN-E397428] | SGN-U579485 | Tomato 200607 | Build 2 | 53 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T198754 [Download][View] | Facility Assigned ID: FA0AAD33CH05RM1 |
Submitter: Koni | Sequencing Facility: INRA |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.985 | Expected Error Rate: 0.0033 | Quality Trim Threshold: 14.5 |