EST details — SGN-E397416

Search information 
Request: 397416Match: SGN-E397416
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184851Clone name: TUS-45-N17
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184851 is on microarray TOM1 spot ID 1-1-8.2.14.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C88880 [cLET-9-P20] Trace: SGN-T104693 EST: SGN-E289878 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E397416Length: 625 bp (864 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E397416 [] (trimmed) TTTGTCTCTCTTAACTTTCTCTTCTCCTTTTCTCCGGCGACCTTTTTTTTACTCCGGTCAGCTATCCGCCGGAAAATCGTAATCTATTGGTGTAT
TCATAGCTTCCTTGATTGTACCTTCTCTTCACCGATCTCAAACTTTATATTAGTCATCATGAATCCAGAATACGACTATCTGTTCAAGCTTTTGC
TTATTGGAGATTCTGGTGTTGGTAAATCGTGTCTTCTCTTGAGATTTGCTGATGATTCATATCTTGAGAGTTACATCAGCACCATCGGTGTGGAC
TTTAAAATCCGCACAGTTGATCAGGATGGGAAAACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAACGTTTTAGGACAATTACCAGCAG
TTACTATCGTGGTGCACATGGCATAATTGTGGTTTATGATGTAACCGATCAAGAGAGCTTCAATAATGTCAAGCAATGGTTGAGTGAGATAGATC
GATATGCAAGTGATAATGTGAACAAACTTCTTGTTGGAAACAAGTGCGATCTCACAGCTCAGAAGGTGGTTTCCACAAAGACTGCTCAGGCTTTT
TGCTGATGAGATCGGCATCCCTTTCATGGAAACTAGTGCAAAAAATGCCACCAAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397416] SGN-U581467 Tomato 200607 Build 2 48 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198742 [Download][View] Facility Assigned ID: FA0AAD33CG09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.962 Expected Error Rate: 0.0070 Quality Trim Threshold: 14.5