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EST details — SGN-E397226

Search information 
Request: 397226Match: SGN-E397226
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184591Clone name: TUS-45-C21
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184591 is on microarray TOM1 spot ID 1-1-4.3.14.15 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C87814 [cLET-5-O20] Trace: SGN-T103688 EST: SGN-E290240 Direction: 5' Facility: TIGR
Clone: SGN-C184591 [TUS-45-C21] Trace: SGN-T198464 EST: SGN-E397138 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E397226Length: 629 bp (851 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397226 [] (trimmed) ATGAGAATAAGTACAGTTTGTCTTCATAAACTACAAGCTGGTTTTTCACATACAGCTCTGAAATGTATTGCAGAATTGTACAATTCCTCCAGGCC
AAAAAGAAAATTACAGGGTTGGGACTCTTTCAGAAGCACCACCGATGACGGTGAGCAAGTTGTTGCCAAAGGGGTCACTCAAATGGGCAGCCAAA
TTCTCAACAGGACCCTGTCCGGTCACATAGGCTTGGATGAAGAAACCAAGCATAGAAAACATGGCTAGTCTTCCATTCTTGATTTCTTTTACCTT
CAAGATTGCTGCCTGGTCTGGGTCCTTTGCTAGGCCTAGTGGGTCAAATGGACCACCTGGGTGTAGCTTGTCCTCCAAATCCAAGCCATTAATAA
TTCTGTAGTACTCAGCACCACCAACAAGAACAACCTCTGCGACGACAGCAAGAATAAGGTTGATGGGAATGTTCTTTCCGAAGTAATTCAATGTG
TTTCCGTCTAGAAGTAAAGCTCCAGTCTTGAACCAAACAGCTTCAGGACCACAGTTGGCACCAAATTTGTTGAAGGCTTCTGGGATAATAAACCC
AGCAGCACCGAGCATAGCCCATCTGGCGTGGATCAGCTCATATGCCTGATATTTGGCGA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397226] SGN-U580870 Tomato 200607 Build 2 302 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198552 [Download][View] Facility Assigned ID: FA0AAD33AB11FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0029 Quality Trim Threshold: 14.5