EST details — SGN-E397117

Search information 
Request: 397117Match: SGN-E397117
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184460Clone name: TUS-44-N10
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184460 is on microarray TOM1 spot ID 1-1-7.2.16.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C77160 [cLES-20-C14] Trace: SGN-T102204 EST: SGN-E290525 Direction: 5' Facility: TIGR
Clone: SGN-C184460 [TUS-44-N10] Trace: SGN-T200003 EST: SGN-E398677 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E397117Length: 622 bp (882 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E397117 [] (trimmed) GGTTACTAAGAATAAATATTTCATAAAACATTAAGGAATTCCAGTGGAAAGCTTATCTTCCTGCTTCTCATCATAACAATGCATATCTAGCTAGG
TCCATAGTTACAATGATAATAGAGCAGTATCAAGTTGAGCTAATTCCCCCCATGAAGGTCTTTGGATCAGGACAATTCCCAGAGAATTGTGCCTG
TGAGAAATCAAAACCGGGATTCTCTTCTTGGAACCTTTGAAGCATGAGCCTTTTCTGTTCAAGATCACTGGCATATGGATCCAACTGTCCTTGGC
CCAATATAGGAGAAGACCATGTCTGACCTTTATCCCTCTTCTGTAAGGTTACATGCAGTATATCATCCTCTAGAGTCCAGAAGGAACAATCGGTC
TTCACTGGGTTCATCAGATCATGATTAAGGTAAGGTGGATTGCCTTTGATCCCAACTTCCAAATGCTTAGACTCAACCTTGCAATAAAATAGCTT
CTTCGGAACATTTTCTGGAAGAGTTATGTAAATGTTCAATTCTTCAAGCGTTTGGTCCCCATTCGAACACCTTCTGGCCATTATGAAAGAAGCTG
TGAAGTTTCTCAGGGGGTAATTTTTCAACCATTCCTTGCAGCCCGGGGGGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E397117] SGN-U580617 Tomato 200607 Build 2 17 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198443 [Download][View] Facility Assigned ID: FA0AAD32DG05FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.959 Expected Error Rate: 0.0086 Quality Trim Threshold: 12.5