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EST details — SGN-E396960

Search information 
Request: 396960Match: SGN-E396960
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C184317Clone name: TUS-44-H11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C184317 is on microarray TOM1 spot ID 1-1-6.4.16.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C73365 [cLER-4-H15] Trace: SGN-T92954 EST: SGN-E278121 Direction: 5' Facility: TIGR
Clone: SGN-C184317 [TUS-44-H11] Trace: SGN-T198287 EST: SGN-E396961 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396960Length: 534 bp (896 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E396960 [] (trimmed) ACAAATCTTTTGAATAATTTAATTACAGAAGTTAAAAAATATAATTTTTTAAAAACCAAAAATCCTTGACCCCCCAAAATTTATTGCTTTGGGAA
ATTTTCTCATCTATGGTGACTAAATGTCTCTGAGACGGAAGCTCTACCCCTCAGTCTCATATCTATAGATAGTCTAAAAAAAAAAGGAAGGAATG
CATGGAAAAGTTTGCGAGACGGAGCCATATGAGGCTCTTCTTTCTTGGTTCTCCTCAGCCTCGACGTCCCACCTGTAGTTATGGTGCTTCTCAAA
GATCGTGACTTTGGATCAAAACTTGAATCTAAAGAAGCAGCAACTATACTGAATGATGCAGGGCCATTATGTGATGCATTAAGAGGGTATCCAAC
TGCTCCATCTTGATGTGGTGGAGGAAATTTTTCACTCTTGCTCTTAGCATTAGCCTGTGTCATCATCCTCCACCTATCGAGGTTCGGGTGGAGCT
CTGCAATATCCTCCGGAGCTGGAATTTGCACGACTAACTCTCTCACGTCTCACTTTCTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396960] SGN-U598492 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198286 [Download][View] Facility Assigned ID: FA0AAD32CD06FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: No vector sequence detected
Passed all screens and filters
Sequence Entropy: 0.968 Expected Error Rate: 0.0130 Quality Trim Threshold: 20.5